HNF1B (Ochotona princeps)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSOPRG00000003933 T213713_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hnf1b
M00408_2.00
Mus musculus
NNHWCNNN

NNNGWDNN
PBM
Berger et al.(2008)
Tcf2_0913
0.867 1.000
HNF1B
M03245_2.00
Homo sapiens
GTTAATNATTAAY

RTTAATNATTAAC
SELEX
Jolma et al.(2013)
HNF1B_1
0.867 1.000
HNF1B
M03246_2.00
Homo sapiens
NGTTAATNATTAAYN

NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1B_2
0.867 1.000
HNF1B
M09168_2.00
Homo sapiens
DGTTAATRATTAACH

DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_HUMAN.H11MO.0.A
0.867 1.000
Hnf1b
M09179_2.00
Mus musculus
DGTTAATRATTAACH

DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_MOUSE.H11MO.0.A
0.867 1.000
HNF1B
M10758_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6_01
0.867 1.000
HNF1B
M10759_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6
0.867 1.000
HNF1B
M10760_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LFA1_Q6
0.867 1.000
HNF1A
M03150_2.00
Homo sapiens
NGTTAATNATTAAYN

NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1A_1
0.866 0.945
HNF1A
M09144_2.00
Homo sapiens
DGTTAATKATTAACH

DGTTAATMATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1A_HUMAN.H11MO.0.C
0.866 0.945
HNF1A
M10690_2.00
Homo sapiens
RGTTAATDWTTRMHV

BDKYAAWHATTAACY
Transfac
Matys et al.(2006)
V$HNF1_01
0.866 0.945
HNF1A
M10691_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q4
0.866 0.945
HNF1A
M10692_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q5
0.866 0.945
HNF1A
M10693_2.00
Homo sapiens
DGBTAATBAWTHAMYWM

KWRKTDAWTVATTAVCH
Transfac
Matys et al.(2006)
V$HNF1_C
0.866 0.945
Hnf1a
M00171_2.00
Mus musculus
HTAAYYNN

NNRRTTAD
PBM
Badis et al.(2009)
Tcf1_2666
0.859 0.927
Hnf1a
M00444_2.00
Mus musculus
HTAAYYNNN

NNNRRTTAD
PBM
Berger et al.(2008)
Tcf1_2666
0.859 0.927
Hnf1a
M09191_2.00
Mus musculus
RGTTAATNWTTDMHN

NDKHAAWNATTAACY
Misc
Kulakovskiy et al.(2013)
HNF1A_MOUSE.H11MO.0.A
0.859 0.927
Hmbox1
M00419_2.00
Mus musculus
NNNGWNNN

NNNWCNNN
PBM
Berger et al.(2008)
Hmbox1_2674
0.638 0.382
HMBOX1
M03167_2.00
Homo sapiens
BKTAACTARB

VYTAGTTAMV
SELEX
Jolma et al.(2013)
HMBOX1_1
0.638 0.382
HMBOX1
M05180_2.00
Homo sapiens
BTAACYAGB

VCTRGTTAV
SELEX
Yin et al.(2017)
HMBOX1_eDBD_HT-SELEX
0.638 0.382
HMBOX1
M05181_2.00
Homo sapiens
NTAACTAGB

VCTAGTTAN
SELEX
Yin et al.(2017)
HMBOX1_eDBD_Methyl-HT-SELEX
0.638 0.382
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000003616 Homeodomain 232 307

Links

Other Homeodomain family TFs
Other Ochotona princeps TFs

210 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29635.m000461 Ricinus communis 29635.m000461 I 0.000
29813.m001543 Ricinus communis 29813.m001543 I 0.000
30084.m000185 Ricinus communis 30084.m000185 I 0.000
30174.m009031 Ricinus communis 30174.m009031 I 0.000
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.000
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.000
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.000
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.000
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.000
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.000
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.000
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.000
Bo2g018360 Brassica oleracea Bo2g018360 I 0.000
Bo3g013830 Brassica oleracea Bo3g013830 I 0.000
Bo9g152440 Brassica oleracea Bo9g152440 I 0.000
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.000
Bra002262 Brassica rapa Bra002262 I 0.000
Bra006518 Brassica rapa Bra006518 I 0.000
Bra020063 Brassica rapa Bra020063 I 0.000
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.000
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.000
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.000
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.000
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.000
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.000
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.000
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.000
Ca_08232 Cicer arietinum Ca_08232 I 0.000
Ca_10494 Cicer arietinum Ca_10494 I 0.000
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.000
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.000
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.000
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.000
Cla010474 Citrullus lanatus Cla010474 I 0.000
Cla012318 Citrullus lanatus Cla012318 I 0.000
Cla021590 Citrullus lanatus Cla021590 I 0.000
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.000
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.000
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.000
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.000
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.000
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.000
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.000
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.000
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.000
F775_02727 Aegilops tauschii F775_02727 I 0.000
F775_04303 Aegilops tauschii F775_04303 I 0.000
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.000
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.000
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.000
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.000
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.000
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.000
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.000
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.000
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.000
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.000
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.000
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.000
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.000
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.000
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.000
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.000
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.000
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.000
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.000
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.000
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.000
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.000
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.000
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.000
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.000
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.000
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.000
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.000
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.000
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.000
MDP0000177547 Malus domestica MDP0000177547 I 0.000
MDP0000276536 Malus domestica MDP0000276536 I 0.000
MDP0000525933 Malus domestica MDP0000525933 I 0.000
MDP0000551969 Malus domestica MDP0000551969 I 0.000
mgf022665m Mimulus guttatus mgf022665m I 0.000
mgf022810m Mimulus guttatus mgf022810m I 0.000
mgf023693m Mimulus guttatus mgf023693m I 0.000
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.000
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.000
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.000
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.000
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.000
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.000
OB07G15030 Oryza brachyantha OB07G15030 I 0.000
OBART07G06690 Oryza barthii OBART07G06690 I 0.000
OBART12G17080 Oryza barthii OBART12G17080 I 0.000
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.000
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.000
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.000
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.000
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.000
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.000
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.000
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.000
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.000
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.000
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.000
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.000
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.000
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.000
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.000
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.000
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.000
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.000
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.000
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.000
OS07G0204000 Oryza sativa OS07G0204000 I 0.000
OS12G0582900 Oryza sativa OS12G0582900 I 0.000
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.000
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.000
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.000
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.000
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.000
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.000
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.000
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.000
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.000
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.000
PK13330.1 Cannabis sativa PK13330.1 I 0.000
PK25269.1 Cannabis sativa PK25269.1 I 0.000
Pm000004 Prunus mume Pm000004 I 0.000
Pm015931 Prunus mume Pm015931 I 0.000
Pm025326 Prunus mume Pm025326 I 0.000
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.000
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.000
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.000
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.000
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.000
POPTR_0019s05170 Populus trichocarpa POPTR_0019s05170 I 0.000
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.000
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.000
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.000
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.000
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.000
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I 0.000
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.000
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.000
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.000
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.000
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.000
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.000
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.000
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.000
Si024417m.g Setaria italica Si024417m.g I 0.000
Si033237m.g Setaria italica Si033237m.g I 0.000
Si038848m.g Setaria italica Si038848m.g I 0.000
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.000
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.000
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.000
TCM_011632 Theobroma cacao TCM_011632 I 0.000
TCM_018659 Theobroma cacao TCM_018659 I 0.000
TCM_025913 Theobroma cacao TCM_025913 I 0.000
TCM_040015 Theobroma cacao TCM_040015 I 0.000
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.000
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.000
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.000
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.000
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.000