CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HNF1B
(
Ochotona princeps
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSOPRG00000003933
T213713_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hnf1b
M00408_2.00
Mus musculus
NNHWCNNN
NNNGWDNN
PBM
Berger et al.(2008)
Tcf2_0913
0.867
1.000
HNF1B
M03245_2.00
Homo sapiens
GTTAATNATTAAY
RTTAATNATTAAC
SELEX
Jolma et al.(2013)
HNF1B_1
0.867
1.000
HNF1B
M03246_2.00
Homo sapiens
NGTTAATNATTAAYN
NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1B_2
0.867
1.000
HNF1B
M09168_2.00
Homo sapiens
DGTTAATRATTAACH
DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_HUMAN.H11MO.0.A
0.867
1.000
Hnf1b
M09179_2.00
Mus musculus
DGTTAATRATTAACH
DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_MOUSE.H11MO.0.A
0.867
1.000
HNF1B
M10758_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6_01
0.867
1.000
HNF1B
M10759_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6
0.867
1.000
HNF1B
M10760_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LFA1_Q6
0.867
1.000
HNF1A
M03150_2.00
Homo sapiens
NGTTAATNATTAAYN
NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1A_1
0.866
0.945
HNF1A
M09144_2.00
Homo sapiens
DGTTAATKATTAACH
DGTTAATMATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1A_HUMAN.H11MO.0.C
0.866
0.945
HNF1A
M10690_2.00
Homo sapiens
RGTTAATDWTTRMHV
BDKYAAWHATTAACY
Transfac
Matys et al.(2006)
V$HNF1_01
0.866
0.945
HNF1A
M10691_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q4
0.866
0.945
HNF1A
M10692_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q5
0.866
0.945
HNF1A
M10693_2.00
Homo sapiens
DGBTAATBAWTHAMYWM
KWRKTDAWTVATTAVCH
Transfac
Matys et al.(2006)
V$HNF1_C
0.866
0.945
Hnf1a
M00171_2.00
Mus musculus
HTAAYYNN
NNRRTTAD
PBM
Badis et al.(2009)
Tcf1_2666
0.859
0.927
Hnf1a
M00444_2.00
Mus musculus
HTAAYYNNN
NNNRRTTAD
PBM
Berger et al.(2008)
Tcf1_2666
0.859
0.927
Hnf1a
M09191_2.00
Mus musculus
RGTTAATNWTTDMHN
NDKHAAWNATTAACY
Misc
Kulakovskiy et al.(2013)
HNF1A_MOUSE.H11MO.0.A
0.859
0.927
Hmbox1
M00419_2.00
Mus musculus
NNNGWNNN
NNNWCNNN
PBM
Berger et al.(2008)
Hmbox1_2674
0.638
0.382
HMBOX1
M03167_2.00
Homo sapiens
BKTAACTARB
VYTAGTTAMV
SELEX
Jolma et al.(2013)
HMBOX1_1
0.638
0.382
HMBOX1
M05180_2.00
Homo sapiens
BTAACYAGB
VCTRGTTAV
SELEX
Yin et al.(2017)
HMBOX1_eDBD_HT-SELEX
0.638
0.382
HMBOX1
M05181_2.00
Homo sapiens
NTAACTAGB
VCTAGTTAN
SELEX
Yin et al.(2017)
HMBOX1_eDBD_Methyl-HT-SELEX
0.638
0.382
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOPRP00000003616
Homeodomain
232
307
RRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE
Links
Other
Homeodomain
family TFs
Other
Ochotona princeps
TFs
210 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AAEL008417
Aedes aegypti
AAEL008417
N
0.000
AARA009694
Anopheles arabiensis
AARA009694
N
0.000
ACAC_0000409101
Angiostrongylus cantonensis
ACAC_0000409101
N
0.000
ACEP12759
Atta cephalotes
ACEP12759
I
0.000
ACHR002403
Anopheles christyi
ACHR002403
N
0.000
ACOC_0001323101
Angiostrongylus costaricensis
ACOC_0001323101
N
0.000
ACOM033320
Anopheles coluzzii
ACOM033320
N
0.000
ACUA003510
Anopheles culicifacies
ACUA003510
N
0.000
ACYPI003297
Acyrthosiphon pisum
ACYPI003297
I
0.000
AEPI008570
Anopheles epiroticus
AEPI008570
N
0.000
AGAP004110
Anopheles gambiae
AGAP004110
N
0.000
ALUE_0001851001
Ascaris lumbricoides
ALUE_0001851001
N
0.000
AMAM021723
Anopheles maculatus
AMAM021723
N
0.000
AMEC005071
Anopheles melas
AMEC005071
N
0.000
AMEM002948
Anopheles merus
AMEM002948
N
0.000
ANCCAN_29654
Ancylostoma caninum
ANCCAN_29654
N
0.000
ANCCEY_08672
Ancylostoma ceylanicum
ANCCEY_08672
N
0.000
AQUA009805
Anopheles quadriannulatus
AQUA009805
N
0.000
ASIS023527
Anopheles sinensis
ASIS023527
N
0.000
ASTEI04275
Anopheles stephensi
ASTEI04275
N
0.000
ASU_10445
Ascaris suum
ASU_10445
N
0.000
A_06553
Schistosoma haematobium
A_06553
N
0.000
BGIBMGA013514
Bombyx mori
BGIBMGA013514
N
0.000
CAOG_02676
Capsaspora owczarzaki
CAOG_02676
N
0.000
CapteG178344
Capitella teleta
CapteG178344
N
0.000
CapteG224864
Capitella teleta
CapteG224864
I
0.000
CBN09380
Caenorhabditis brenneri
CBN09380
N
0.000
ccdc124
Oryzias latipes
ENSORLG00000015728
N
0.000
Cflo_06133--XP_394373.1_APIME
Camponotus floridanus
Cflo_06133--XP_394373.1_APIME
I
0.000
cgd2_870
Cryptosporidium parvum
cgd2_870
N
0.000
CGI_10019404
Crassostrea gigas
CGI_10019404
N
0.000
CHD4
Microcebus murinus
ENSMICG00000006588
N
0.000
CHD4
Ochotona princeps
ENSOPRG00000003477
N
0.000
CHD4
Echinops telfairi
ENSETEG00000005912
N
0.000
CJA05209
Caenorhabditis japonica
CJA05209
N
0.000
CLEC002888
Cimex lectularius
CLEC002888
N
0.000
CMU_009510
Cryptosporidium muris
CMU_009510
N
0.000
CPIJ005084
Culex quinquefasciatus
CPIJ005084
N
0.000
CpipJ_CPIJ005084
Culex pipiens
CpipJ_CPIJ005084
N
0.000
CRE03905
Caenorhabditis remanei
CRE03905
N
0.000
CY34DRAFT_106474
Suillus luteus
CY34DRAFT_106474
N
0.000
D917_07703
Trichinella nativa
D917_07703
N
0.000
D918_07944
Trichuris suis
D918_07944
N
0.000
DAPPUDRAFT_303074
Daphnia pulex
DAPPUDRAFT_303074
N
0.000
DICVIV_03175
Dictyocaulus viviparus
DICVIV_03175
N
0.000
EMIHUDRAFT_117867
Emiliania huxleyi
EMIHUDRAFT_117867
I
0.000
ENSCING00000023833
Ciona intestinalis
ENSCING00000023833
N
0.000
ENSMODG00000024829
Monodelphis domestica
ENSMODG00000024829
N
0.000
ENSSHAG00000004107
Sarcophilus harrisii
ENSSHAG00000004107
N
0.000
estExt_fgenesh1_kg.C_80399
Phytophthora capsici
estExt_fgenesh1_kg.C_80399
N
0.000
estExt_fgenesh2_pg.C_1070085
Branchiostoma floridae
estExt_fgenesh2_pg.C_1070085
N
0.000
estExt_fgenesh2_pm.C_3240002
Branchiostoma floridae
estExt_fgenesh2_pm.C_3240002
N
0.000
ETH_00032160
Eimeria tenella
ETH_00032160
N
0.000
F443_19335
Phytophthora parasitica
F443_19335
N
0.000
fgenesh1_pg.C_scaffold_73784000001
Phytophthora capsici
fgenesh1_pg.C_scaffold_73784000001
N
0.000
fgenesh1_pm.2_#_13
Coccomyxa subellipsoidea C169
fgenesh1_pm.2_#_13
N
0.000
fgeneshCV_pg.C_scaffold_2000022
Chlorella vulgaris
fgeneshCV_pg.C_scaffold_2000022
N
0.000
fgenesh_scip_prom.46568.2049
Phytophthora kernoviae
fgenesh_scip_prom.46568.2049
N
0.000
GB50764
Apis mellifera
GB50764
I
0.000
GE25578
Drosophila yakuba
FBgn0242642
I
0.000
GG13363
Drosophila erecta
FBgn0105635
N
0.000
GH18160
Drosophila grimshawi
FBgn0125628
I
0.000
GK13574
Drosophila willistoni
FBgn0215582
I
0.000
GLOINDRAFT_6870
Rhizophagus irregularis
GLOINDRAFT_6870
N
0.000
GLYMA01G28820
Glycine max
GLYMA01G28820
I
0.000
GLYMA03G08270
Glycine max
GLYMA03G08270
I
0.000
GPUH_0000676401
Gongylonema pulchrum
GPUH_0000676401
N
0.000
GSTUM_00007488001
Tuber melanosporum
GSTUM_00007488001
N
0.000
GUITHDRAFT_162866
Guillardia theta
GUITHDRAFT_162866
N
0.000
HCOI00594600
Haemonchus contortus
HCOI00594600
N
0.000
HelroG66455
Helobdella robusta
HelroG66455
N
0.000
HHAL005242-PA
Halyomorpha halys
HHAL005242-PA
I
0.000
HMEL009197
Heliconius melpomene
HMEL009197
N
0.000
HPBE_0001252601
Heligmosomoides bakeri
HPBE_0001252601
N
0.000
HPLM_0000348901
Haemonchus placei
HPLM_0000348901
N
0.000
Hsal_04778--XP_394373.1_APIME
Harpegnathos saltator
Hsal_04778--XP_394373.1_APIME
I
0.000
ISCW011313
Ixodes scapularis
ISCW011313
N
0.000
KGM_20190
Danaus plexippus
KGM_20190
I
0.000
LCUP006380
Lucilia cuprina
LCUP006380
N
0.000
LotgiG105193
Lottia gigantea
LotgiG105193
N
0.000
LotgiG126557
Lottia gigantea
LotgiG126557
N
0.000
M404DRAFT_79773
Pisolithus tinctorius
M404DRAFT_79773
N
0.000
M407DRAFT_16670
Tulasnella calospora
M407DRAFT_16670
N
0.000
maker-nMf.1.1.scaf18285-snap-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf18285-snap-gene-0.4
N
0.000
maker-pir_contig_430-fgenesh-gene-0.3
Pythium irregulare
maker-pir_contig_430-fgenesh-gene-0.3
N
0.000
maker-piw_contig_1911-snap-gene-0.6
Pythium iwayamai
maker-piw_contig_1911-snap-gene-0.6
N
0.000
MCINX012524
Melitaea cinxia
MCINX012524
I
0.000
MDOA001488
Musca domestica
MDOA001488
I
0.000
mgf012563m
Mimulus guttatus
mgf012563m
I
0.000
MhA1_Contig1250.frz3.gene10
Meloidogyne hapla
MhA1_Contig1250.frz3.gene10
N
0.000
Minc12734
Meloidogyne incognita
Minc12734
N
0.000
ML11467a
Mnemiopsis leidyi
ML11467a
N
0.000
Moror_16065
Moniliophthora roreri
Moror_16065
I
0.000
MPER_07337
Moniliophthora perniciosa
MPER_07337
N
0.000
MYCTH_2308522
Myceliophthora thermophila
MYCTH_2308522
I
0.000
NBR_0000605501
Nippostrongylus brasiliensis
NBR_0000605501
N
0.000
NECAME_12352
Necator americanus
NECAME_12352
N
0.000
NEMVEDRAFT_v1g201358
Nematostella vectensis
NEMVEDRAFT_v1g201358
I
0.000
NV13812
Nasonia vitripennis
NV13812
I
0.000
Ocbimv22013575m.g
Octopus bimaculoides
Ocbimv22013575m.g
I
0.000
OESDEN_05486
Oesophagostomum dentatum
OESDEN_05486
N
0.000
PEQ_0000413701
Parascaris equorum
PEQ_0000413701
N
0.000
PHACADRAFT_58554
Phanerochaete carnosa
PHACADRAFT_58554
N
0.000
PHUM036320
Pediculus humanus
PHUM036320
N
0.000
Physo132366
Phytophthora sojae
Physo132366
N
0.000
PLICRDRAFT_179042
Plicaturopsis crispa
PLICRDRAFT_179042
I
0.000
PTSG_02585
Salpingoeca rosetta
PTSG_02585
N
0.000
PYU1_G003004
Pythium ultimum
PYU1_G003004
N
0.000
RPRC009760
Rhodnius prolixus
RPRC009760
N
0.000
S40285_07156
Stachybotrys chlorohalonata
S40285_07156
N
0.000
S40288_05696
Stachybotrys chartarum
S40288_05696
N
0.000
SBAD_0000307901
Soboliphyme baturini
SBAD_0000307901
N
0.000
SINV12391
Solenopsis invicta
SINV12391
I
0.000
Sjc_0011880
Schistosoma japonicum
Sjc_0011880
N
0.000
Smp_004360
Schistosoma mansoni
Smp_004360
N
0.000
SMRZ_0002114501
Schistosoma margrebowiei
SMRZ_0002114501
N
0.000
SPPG_03193
Spizellomyces punctatus
SPPG_03193
N
0.000
SPRG_06372
Saprolegnia parasitica
SPRG_06372
N
0.000
TC004658
Tribolium castaneum
TC004658
N
0.000
TCLT_0001081001
Thelazia callipaeda
TCLT_0001081001
N
0.000
TELCIR_11967
Teladorsagia circumcincta
TELCIR_11967
N
0.000
tetur18g00680
Tetranychus urticae
tetur18g00680
I
0.000
TGME49_037260
Toxoplasma gondii
TGME49_037260
N
0.000
THITE_22048
Thielavia terrestris
THITE_22048
I
0.000
TMUE_s0148001000
Trichuris muris
TMUE_s0148001000
N
0.000
TRE_0001918901
Trichobilharzia regenti
TRE_0001918901
N
0.000
TTRE_0000309701
Trichuris trichiura
TTRE_0000309701
N
0.000
XP_002941963
Xenopus tropicalis
XP_002941963
N
0.000
Y73E7A.1
Caenorhabditis elegans
WBGene00022268
N
0.000