PBX1 (Ochotona princeps)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSOPRG00000006942 T213738_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Pbx1
M00513_2.00
Mus musculus
NNDKANNNN

NNNNTMHNN
PBM
Berger et al.(2008)
Pbx1_3203
0.867 1.000
PBX1
M05362_2.00
Homo sapiens
NTGATKGAYR

YRTCMATCAN
SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX
0.867 1.000
PBX1
M05364_2.00
Homo sapiens
DTGMTKGRYN

NRYCMAKCAH
SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX
0.867 1.000
PBX1
M02685_2.00
Homo sapiens
WWTGATTGATND

HNATCAATCAWW
SELEX
Mathelier et al.(2014)
MA0070.1
0.867 1.000
PBX1
M09164_2.00
Homo sapiens
DGABTGRCRG

CYGYCAVTCH
Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A
0.867 1.000
PBX1
M09561_2.00
Homo sapiens
TGABTGACAGSC

GSCTGTCAVTCA
Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007
0.867 1.000
PBX1
M10748_2.00
Homo sapiens
WTKATTRDT

AHYAATMAW
Transfac
Matys et al.(2006)
V$PBX1_01
0.867 1.000
PBX1
M10749_2.00
Homo sapiens
DNHTTGATTGATKDB

VHMATCAATCAADNH
Transfac
Matys et al.(2006)
V$PBX1_02
0.867 1.000
PBX1
M10750_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_03
0.867 1.000
PBX1
M10751_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_05
0.867 1.000
PBX1
M10752_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_10
0.867 1.000
PBX1
M10753_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_Q3
0.867 1.000
PBX1
M05363_2.00
Homo sapiens
DTGAKKGAYG

CRTCMMTCAH
SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX
0.867 1.000
PBX1
M05365_2.00
Homo sapiens
MRTCAATCMH

DKGATTGAYK
SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX
0.867 1.000
pbx4
M02110_2.00
Tetraodon nigroviridis
TTGAYGDV

BHCRTCAA
PBM
Weirauch et al.(2014)
pTH6425
0.867 0.982
PBX2
M08134_2.00
Homo sapiens
NWGAKTGACABN

NVTGTCAMTCWN
ChIP-seq
Mathelier et al.(2014)
MA1113.1
0.867 0.965
PBX2
M09165_2.00
Homo sapiens
KRVHKTGATTGAWKN

NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C
0.867 0.965
Pbx2
M09199_2.00
Mus musculus
KRVHKTGATTGAWKN

NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C
0.867 0.965
Pbx3
M09205_2.00
Mus musculus
BBBTGATTGRYNDN

NHNRYCAATCAVVV
Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A
0.865 0.965
exd
M06487_2.00
Drosophila melanogaster
YRTCAAAN

NTTTGAYR
B1H
Mathelier et al.(2014)
MA0222.1
0.822 0.947
exd
M06243_2.00
Drosophila melanogaster
YRTCAAAN

NTTTGAYR
B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611
0.822 0.947
exd
M06244_2.00
Drosophila melanogaster
NWRNWYNAAA

TTTNRWNYWN
B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611
0.822 0.947
exd
M06245_2.00
Drosophila melanogaster
NDTGAYRW

WYRTCAHN
B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611
0.822 0.947
exd
M06246_2.00
Drosophila melanogaster
NNDTGAYR

YRTCAHNN
B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611
0.822 0.947
PBX4
M00277_2.00
Homo sapiens
NNDDWHDNNN

NNNHDWHHNN
PBM
Barrera et al.(2016)
PBX4_REF
0.815 0.877
PBX4
M10649_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX4_01
0.815 0.877
CBG10835
M01243_2.00
Caenorhabditis briggsae
NNTKAYDNN

NNHRTMANN
PBM
Lambert et al.(2019)
pTH11444
0.691 0.579
PBX4
M00276_2.00
Homo sapiens
NYTAATTADNN

NNHTAATTARN
PBM
Barrera et al.(2016)
PBX4_R215Q
0.677 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000006358 Homeodomain 234 293

Links

Other Homeodomain family TFs
Other Ochotona princeps TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ZNF281 Homo sapiens ENSG00000162702 D 0.000
Zfp281 Mus musculus ENSMUSG00000041483 D 0.000
znf281b Tetraodon nigroviridis ENSTNIG00000018917 I 0.000
znf281a Tetraodon nigroviridis ENSTNIG00000016430 I 0.000
ZNF281 Taeniopygia guttata ENSTGUG00000004438 I 0.000
ZNF281 Sus scrofa ENSSSCG00000010911 I 0.000
Zfp281 Rattus norvegicus ENSRNOG00000058643 I 0.000
ZNF281 Pan troglodytes ENSPTRG00000015318 I 0.000
ENSPFOG00000008024 Poecilia formosa ENSPFOG00000008024 I 0.000
ENSPFOG00000000851 Poecilia formosa ENSPFOG00000000851 I 0.000
ENSPANG00000017386 Papio anubis ENSPANG00000017386 I 0.000
znf148 Oryzias latipes ENSORLG00000015950 I 0.000
znf281b Oryzias latipes ENSORLG00000005292 I 0.000
znf281a Oryzias latipes ENSORLG00000002799 I 0.000
ENSONIG00000016453 Oreochromis niloticus ENSONIG00000016453 I 0.000
ENSONIG00000000839 Oreochromis niloticus ENSONIG00000000839 I 0.000
znf281b Takifugu rubripes ENSTRUG00000008207 I 0.000
znf281a Takifugu rubripes ENSTRUG00000016619 I 0.000
znf281 Xenopus tropicalis XB-GENE-5933312 I 0.000
Tal_R010113 Tyto alba Tal_R010113 I 0.000
Pvit_14619 Pogona vitticeps Pvit_14619 I 0.000
Pvit_03082 Pogona vitticeps Pvit_03082 I 0.000
Ogr00130 Ophisaurus gracilis Ogr00130 I 0.000
Gfo_R006633 Geospiza fortis Gfo_R006633 I 0.000
ENSP00000356322 Macaca fascicularis ENSP00000356322 I 0.000
ENSP00000356322-D1 Bos grunniens ENSP00000356322-D1 I 0.000
Cmyd_10021057 Chelonia mydas Cmyd_10021057 I 0.000
Brh_R005182 Buceros rhinoceros Brh_R005182 I 0.000
Alligator_sinensis_CCG011250.1 Alligator sinensis Alligator_sinensis_CCG011250.1 I 0.000
Afo_R004007 Aptenodytes forsteri Afo_R004007 I 0.000
Aan_R014758 Calypte anna Aan_R014758 I 0.000
ZNF281 Tursiops truncatus ENSTTRG00000004326 I 0.000
ENSTSYG00000007604 Tarsius syrichta ENSTSYG00000007604 I 0.000
ZNF281 Otolemur garnettii ENSOGAG00000010366 I 0.000
ZNF281 Oryctolagus cuniculus ENSOCUG00000010120 I 0.000
ENSFALG00000014467 Ficedula albicollis ENSFALG00000014467 I 0.000
ZNF281 Erinaceus europaeus ENSEEUG00000011443 I 0.000
ZNF281 Equus caballus ENSECAG00000024354 I 0.000
Zfp281 Dipodomys ordii ENSDORG00000002833 I 0.000
ZNF281 Dasypus novemcinctus ENSDNOG00000016981 I 0.000
znf148 Danio rerio ENSDARG00000055106 I 0.000
znf281b Danio rerio ENSDARG00000035910 I 0.000
znf281a Danio rerio ENSDARG00000000567 I 0.000
ENSCSAG00000000250 Chlorocebus sabaeus ENSCSAG00000000250 I 0.000
ZNF281 Callithrix jacchus ENSCJAG00000005104 I 0.000
ZNF281 Choloepus hoffmanni ENSCHOG00000004074 I 0.000
ENSAMXG00000015147 Astyanax mexicanus ENSAMXG00000015147 I 0.000
ENSAMXG00000006245 Astyanax mexicanus ENSAMXG00000006245 I 0.000
ENSAMXG00000006043 Astyanax mexicanus ENSAMXG00000006043 I 0.000
ZNF281 Anolis carolinensis ENSACAG00000006286 I 0.000
znf281b Gasterosteus aculeatus ENSGACG00000006858 I 0.000
ZNF281 Ornithorhynchus anatinus ENSOANG00000004857 I 0.000
ENSNLEG00000018067 Nomascus leucogenys ENSNLEG00000018067 I 0.000
ENSMPUG00000019246 Mustela putorius furo ENSMPUG00000019246 I 0.000
ZNF281 Monodelphis domestica ENSMODG00000012840 I 0.000
ZNF281 Macaca mulatta ENSMMUG00000007334 I 0.000
ZNF281 Microcebus murinus ENSMICG00000001070 I 0.000
ENSMEUG00000011709 Macropus eugenii ENSMEUG00000011709 I 0.000
ENSLOCG00000011584 Lepisosteus oculatus ENSLOCG00000011584 I 0.000
ENSLACG00000014572 Latimeria chalumnae ENSLACG00000014572 I 0.000
ENSLACG00000006364 Latimeria chalumnae ENSLACG00000006364 I 0.000
ENSGMOG00000008854 Gadus morhua ENSGMOG00000008854 I 0.000
ENSGMOG00000001704 Gadus morhua ENSGMOG00000001704 I 0.000
ZNF281 Gorilla gorilla ENSGGOG00000010349 I 0.000
znf281a Gasterosteus aculeatus ENSGACG00000009536 I 0.000
ZNF148 Anolis carolinensis ENSACAG00000010047 I 0.000