PBX1 (Ochotona princeps)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSOPRG00000006942 T213738_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Pbx1
M00513_2.00
Mus musculus
NNDKANNNN

NNNNTMHNN
PBM
Berger et al.(2008)
Pbx1_3203
0.867 1.000
PBX1
M05362_2.00
Homo sapiens
NTGATKGAYR

YRTCMATCAN
SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX
0.867 1.000
PBX1
M05364_2.00
Homo sapiens
DTGMTKGRYN

NRYCMAKCAH
SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX
0.867 1.000
PBX1
M02685_2.00
Homo sapiens
WWTGATTGATND

HNATCAATCAWW
SELEX
Mathelier et al.(2014)
MA0070.1
0.867 1.000
PBX1
M09164_2.00
Homo sapiens
DGABTGRCRG

CYGYCAVTCH
Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A
0.867 1.000
PBX1
M09561_2.00
Homo sapiens
TGABTGACAGSC

GSCTGTCAVTCA
Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007
0.867 1.000
PBX1
M10748_2.00
Homo sapiens
WTKATTRDT

AHYAATMAW
Transfac
Matys et al.(2006)
V$PBX1_01
0.867 1.000
PBX1
M10749_2.00
Homo sapiens
DNHTTGATTGATKDB

VHMATCAATCAADNH
Transfac
Matys et al.(2006)
V$PBX1_02
0.867 1.000
PBX1
M10750_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_03
0.867 1.000
PBX1
M10751_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_05
0.867 1.000
PBX1
M10752_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_10
0.867 1.000
PBX1
M10753_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_Q3
0.867 1.000
PBX1
M05363_2.00
Homo sapiens
DTGAKKGAYG

CRTCMMTCAH
SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX
0.867 1.000
PBX1
M05365_2.00
Homo sapiens
MRTCAATCMH

DKGATTGAYK
SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX
0.867 1.000
pbx4
M02110_2.00
Tetraodon nigroviridis
TTGAYGDV

BHCRTCAA
PBM
Weirauch et al.(2014)
pTH6425
0.867 0.982
PBX2
M08134_2.00
Homo sapiens
NWGAKTGACABN

NVTGTCAMTCWN
ChIP-seq
Mathelier et al.(2014)
MA1113.1
0.867 0.965
PBX2
M09165_2.00
Homo sapiens
KRVHKTGATTGAWKN

NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C
0.867 0.965
Pbx2
M09199_2.00
Mus musculus
KRVHKTGATTGAWKN

NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C
0.867 0.965
Pbx3
M09205_2.00
Mus musculus
BBBTGATTGRYNDN

NHNRYCAATCAVVV
Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A
0.865 0.965
exd
M06487_2.00
Drosophila melanogaster
YRTCAAAN

NTTTGAYR
B1H
Mathelier et al.(2014)
MA0222.1
0.822 0.947
exd
M06243_2.00
Drosophila melanogaster
YRTCAAAN

NTTTGAYR
B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611
0.822 0.947
exd
M06244_2.00
Drosophila melanogaster
NWRNWYNAAA

TTTNRWNYWN
B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611
0.822 0.947
exd
M06245_2.00
Drosophila melanogaster
NDTGAYRW

WYRTCAHN
B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611
0.822 0.947
exd
M06246_2.00
Drosophila melanogaster
NNDTGAYR

YRTCAHNN
B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611
0.822 0.947
PBX4
M00277_2.00
Homo sapiens
NNDDWHDNNN

NNNHDWHHNN
PBM
Barrera et al.(2016)
PBX4_REF
0.815 0.877
PBX4
M10649_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX4_01
0.815 0.877
CBG10835
M01243_2.00
Caenorhabditis briggsae
NNTKAYDNN

NNHRTMANN
PBM
Lambert et al.(2019)
pTH11444
0.691 0.579
PBX4
M00276_2.00
Homo sapiens
NYTAATTADNN

NNHTAATTARN
PBM
Barrera et al.(2016)
PBX4_R215Q
0.677 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000006358 Homeodomain 234 293

Links

Other Homeodomain family TFs
Other Ochotona princeps TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_03183 Aegilops tauschii F775_03183 N 0.000
F775_03184 Aegilops tauschii F775_03184 I 0.000
F775_04954 Aegilops tauschii F775_04954 N 0.000
F775_23182 Aegilops tauschii F775_23182 I 0.000
WRKY62 Arabidopsis lyrata Al_scaffold_0006_13 I 0.000
WRKY62 Arabidopsis thaliana AT5G01900 D 0.000
WRKY63 Arabidopsis thaliana AT1G66600 D 0.000
WRKY64 Arabidopsis thaliana AT1G66560 I 0.000
Bostr.6251s0160 Boechera stricta Bostr.6251s0160 I 0.000
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I 0.000
Bostr.25463s0359 Boechera stricta Bostr.25463s0359 I 0.000
BRADI2G53500 Brachypodium distachyon BRADI2G53500 N 0.000
BRADI2G53495 Brachypodium distachyon BRADI2G53495 I 0.000
Bo5g068250 Brassica oleracea Bo5g068250 I 0.000
Bra028918 Brassica rapa Bra028918 I 0.000
Bra023211 Brassica rapa Bra023211 I 0.000
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I 0.000
Carubv10012720m.g Capsella rubella Carubv10012720m.g I 0.000
Carubv10021899m.g Capsella rubella Carubv10021899m.g I 0.000
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I 0.000
MLOC_34506 Hordeum vulgare MLOC_34506 N 0.000
MLOC_68061 Hordeum vulgare MLOC_68061 I 0.000
LPERR01G30490 Leersia perrieri LPERR01G30490 I 0.000
LPERR05G16160 Leersia perrieri LPERR05G16160 N 0.000
OBART11G01070 Oryza barthii OBART11G01070 N 0.000
OBART05G20330 Oryza barthii OBART05G20330 I 0.000
OBART05G20320 Oryza barthii OBART05G20320 N 0.000
OBART01G35350 Oryza barthii OBART01G35350 I 0.000
OBART01G35310 Oryza barthii OBART01G35310 I 0.000
OB05G27850 Oryza brachyantha OB05G27850 I 0.000
OB05G27830 Oryza brachyantha OB05G27830 I 0.000
OB01G44140 Oryza brachyantha OB01G44140 I 0.000
ORGLA01G0291800 Oryza glaberrima ORGLA01G0291800 I 0.000
ORGLA01G0291900 Oryza glaberrima ORGLA01G0291900 I 0.000
ORGLA05G0177300 Oryza glaberrima ORGLA05G0177300 N 0.000
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I 0.000
ORGLA11G0201600 Oryza glaberrima ORGLA11G0201600 N 0.000
OGLUM05G21510 Oryza glumaepatula OGLUM05G21510 I 0.000
OGLUM05G21470 Oryza glumaepatula OGLUM05G21470 I 0.000
OGLUM05G21440 Oryza glumaepatula OGLUM05G21440 I 0.000
OGLUM05G21430 Oryza glumaepatula OGLUM05G21430 N 0.000
BGIOSGA017861 Oryza indica BGIOSGA017861 N 0.000
BGIOSGA004704 Oryza indica BGIOSGA004704 I 0.000
BGIOSGA004703 Oryza indica BGIOSGA004703 I 0.000
OLONG_007113 Oryza longistaminata OLONG_007113 N 0.000
OLONG_027124 Oryza longistaminata OLONG_027124 I 0.000
OMERI01G32490 Oryza meridionalis OMERI01G32490 I 0.000
OMERI01G32480 Oryza meridionalis OMERI01G32480 I 0.000
OMERI05G18240 Oryza meridionalis OMERI05G18240 N 0.000
ONIVA01G40340 Oryza nivara ONIVA01G40340 I 0.000
ONIVA01G40370 Oryza nivara ONIVA01G40370 I 0.000
ONIVA05G21450 Oryza nivara ONIVA05G21450 N 0.000
OPUNC05G18030 Oryza punctata OPUNC05G18030 I 0.000
OPUNC05G18000 Oryza punctata OPUNC05G18000 I 0.000
OPUNC05G17990 Oryza punctata OPUNC05G17990 N 0.000
OPUNC05G17980 Oryza punctata OPUNC05G17980 I 0.000
OPUNC01G34270 Oryza punctata OPUNC01G34270 N 0.000
OPUNC01G34280 Oryza punctata OPUNC01G34280 I 0.000
ORUFI05G21590 Oryza rufipogon ORUFI05G21590 N 0.000
ORUFI01G38660 Oryza rufipogon ORUFI01G38660 I 0.000
ORUFI01G38670 Oryza rufipogon ORUFI01G38670 I 0.000
OS01G0820700 Oryza sativa OS01G0820700 I 0.000
OS05G0478700 Oryza sativa OS05G0478700 N 0.000
Pavir.J37617 Panicum virgatum Pavir.J37617 N 0.000
Pavir.J05812 Panicum virgatum Pavir.J05812 I 0.000
Pavir.Ib01568 Panicum virgatum Pavir.Ib01568 I 0.000
Pavir.Eb03562 Panicum virgatum Pavir.Eb03562 I 0.000
Pavir.Ea03257 Panicum virgatum Pavir.Ea03257 I 0.000
Pavir.Ea03256 Panicum virgatum Pavir.Ea03256 N 0.000
Pavir.J38024 Panicum virgatum Pavir.J38024 N 0.000
Si003782m.g Setaria italica Si003782m.g N 0.000
Si027574m.g Setaria italica Si027574m.g I 0.000
Si022933m.g Setaria italica Si022933m.g N 0.000
Si005138m.g Setaria italica Si005138m.g N 0.000
Si002121m.g Setaria italica Si002121m.g I 0.000
Sb03g038180 Sorghum bicolor Sb03g038180 I 0.000
Sb03g038190 Sorghum bicolor Sb03g038190 N 0.000
Sb09g023500 Sorghum bicolor Sb09g023500 N 0.000
TRAES3BF001300030CFD_g Triticum aestivum TRAES3BF001300030CFD_g I 0.000
Traes_3DL_48F7A19D2 Triticum aestivum Traes_3DL_48F7A19D2 I 0.000
TRAES3BF081400030CFD_g Triticum aestivum TRAES3BF081400030CFD_g I 0.000
Traes_3AL_2297D6E18 Triticum aestivum Traes_3AL_2297D6E18 I 0.000
TRAES3BF005100010CFD_g Triticum aestivum TRAES3BF005100010CFD_g I 0.000
TRIUR3_31234 Triticum urartu TRIUR3_31234 N 0.000
TRIUR3_17401 Triticum urartu TRIUR3_17401 I 0.000
TRIUR3_16097 Triticum urartu TRIUR3_16097 N 0.000
GRMZM2G158328 Zea mays GRMZM2G158328 I 0.000
GRMZM2G029282 Zea mays GRMZM2G029282 N 0.000
GRMZM2G034421 Zea mays GRMZM2G034421 N 0.000
GRMZM2G065290 Zea mays GRMZM2G065290 I 0.000