CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LHX2
(
Ochotona princeps
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSOPRG00000008555
T213750_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LHX2
M02085_2.00
Homo sapiens
NNNYAAHDDN
NHHDTTRNNN
PBM
Weirauch et al.(2014)
pTH5812
0.724
0.947
Lhx2
M00380_2.00
Mus musculus
NTAATKRN
NYMATTAN
PBM
Berger et al.(2008)
Lhx2_0953
0.724
0.947
Lhx9
M00406_2.00
Mus musculus
NTAATDRN
NYHATTAN
PBM
Berger et al.(2008)
Lhx9_3492
0.724
0.947
LHX2
M03106_2.00
Homo sapiens
NNTAATTAGN
NCTAATTANN
SELEX
Jolma et al.(2013)
LHX2_1
0.724
0.947
LHX2
M03107_2.00
Homo sapiens
YAATTANVCTAATTR
YAATTAGBNTAATTR
SELEX
Jolma et al.(2013)
LHX2_2
0.724
0.947
LHX9
M03163_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
LHX9_1
0.724
0.947
LHX9
M03164_2.00
Homo sapiens
TAATTRGYMATTA
TAATKRCYAATTA
SELEX
Jolma et al.(2013)
LHX9_2
0.724
0.947
LHX9
M05170_2.00
Homo sapiens
YTAATTRG
CYAATTAR
SELEX
Yin et al.(2017)
LHX9_eDBD_HT-SELEX
0.724
0.947
LHX9
M05173_2.00
Homo sapiens
NTAATTRG
CYAATTAN
SELEX
Yin et al.(2017)
LHX9_FL_HT-SELEX
0.724
0.947
LHX2
M09136_2.00
Homo sapiens
NBYTAATTRVNB
VNBYAATTARVN
Misc
Kulakovskiy et al.(2013)
LHX2_HUMAN.H11MO.0.A
0.724
0.947
Lhx2
M09169_2.00
Mus musculus
NNTAATKRGN
NCYMATTANN
Misc
Kulakovskiy et al.(2013)
LHX2_MOUSE.H11MO.0.A
0.724
0.947
Lhx2
M09562_2.00
Mus musculus
NYTAATTA
TAATTARN
Misc
Heinz et al.(2010)
HFSC-Lhx2_GSE48068
0.724
0.947
LHX2
M10655_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX2_Q4
0.724
0.947
LHX2
M10656_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX2_Q6
0.724
0.947
LHX9
M05171_2.00
Homo sapiens
YTAATTRS
SYAATTAR
SELEX
Yin et al.(2017)
LHX9_eDBD_Methyl-HT-SELEX_1
0.724
0.947
LHX9
M05172_2.00
Homo sapiens
HTAACGAB
VTCGTTAD
SELEX
Yin et al.(2017)
LHX9_eDBD_Methyl-HT-SELEX_2
0.724
0.947
LHX9
M05174_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
LHX9_FL_Methyl-HT-SELEX_1
0.724
0.947
LHX9
M05175_2.00
Homo sapiens
HTAACGAB
VTCGTTAD
SELEX
Yin et al.(2017)
LHX9_FL_Methyl-HT-SELEX_2
0.724
0.947
ap
M06478_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Mathelier et al.(2014)
MA0209.1
0.706
0.895
ap
M06214_2.00
Drosophila melanogaster
VYTAATKA
TMATTARB
B1H
Zhu et al.(2011)
Ap_Cell_FBgn0000099
0.706
0.895
ap
M06215_2.00
Drosophila melanogaster
BAATHA
TDATTV
B1H
Zhu et al.(2011)
ap_FlyReg_FBgn0000099
0.706
0.895
ap
M06216_2.00
Drosophila melanogaster
HTAATKR
YMATTAD
B1H
Zhu et al.(2011)
Ap_SOLEXA_FBgn0000099
0.706
0.895
ap
M10781_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$AP_Q6
0.706
0.895
LHX6
M02086_2.00
Homo sapiens
NTRATTRN
NYAATYAN
PBM
Weirauch et al.(2014)
pTH6556
0.630
0.526
Lhx6
M00434_2.00
Mus musculus
NTRATTRN
NYAATYAN
PBM
Berger et al.(2008)
Lhx6_2272
0.630
0.526
Lhx8
M00534_2.00
Mus musculus
NNTRATKRN
NYMATYANN
PBM
Berger et al.(2008)
Lhx8_2247
0.630
0.526
Lhx6_CONSTRUCT
M00539_2.00
PBM CONSTRUCTS
NNTRATTRN
NYAATYANN
PBM
Berger et al.(2008)
Lhx6_3432
0.630
0.526
LHX6
M03108_2.00
Homo sapiens
VYTAATTAVB
VBTAATTARB
SELEX
Jolma et al.(2013)
LHX6_1
0.630
0.526
LHX6
M03109_2.00
Homo sapiens
YAATYARYRCTAATTA
TAATTAGYRYTRATTR
SELEX
Jolma et al.(2013)
LHX6_2
0.630
0.526
LHX6
M03110_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Jolma et al.(2013)
LHX6_3
0.630
0.526
Lhx8
M03288_2.00
Mus musculus
BYRATYRVNNBTRATYRN
NYRATYAVNNBYRATYRV
SELEX
Jolma et al.(2013)
Lhx8_1
0.630
0.526
Lhx8
M03289_2.00
Mus musculus
BYRATYRV
BYRATYRV
SELEX
Jolma et al.(2013)
Lhx8_2
0.630
0.526
Lhx8
M03290_2.00
Mus musculus
TRATTGCAATYA
TRATTGCAATYA
SELEX
Jolma et al.(2013)
Lhx8_3
0.630
0.526
LHX6
M04992_2.00
Homo sapiens
CTAATTRV
BYAATTAG
SELEX
Yin et al.(2017)
LHX6_FL_HT-SELEX_1
0.630
0.526
LHX6
M04993_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Yin et al.(2017)
LHX6_FL_HT-SELEX_2
0.630
0.526
LHX8
M05210_2.00
Homo sapiens
STAATTAN
NTAATTAS
SELEX
Yin et al.(2017)
LHX8_FL_HT-SELEX_1
0.630
0.526
LHX8
M05211_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Yin et al.(2017)
LHX8_FL_HT-SELEX_2
0.630
0.526
LHX6
M05870_2.00
Homo sapiens
NYTRATTR
YAATYARN
SMiLE-seq
Isakova et al.(2017)
LHX6
0.630
0.526
Lhx6
M09187_2.00
Mus musculus
NYTGATTRV
BYAATCARN
Misc
Kulakovskiy et al.(2013)
LHX6_MOUSE.H11MO.0.C
0.630
0.526
LHX8
M10713_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX8_06
0.630
0.526
LHX6
M04994_2.00
Homo sapiens
STAATTAV
BTAATTAS
SELEX
Yin et al.(2017)
LHX6_FL_Methyl-HT-SELEX_1
0.630
0.526
LHX6
M04995_2.00
Homo sapiens
HTAACGAG
CTCGTTAD
SELEX
Yin et al.(2017)
LHX6_FL_Methyl-HT-SELEX_2
0.630
0.526
LHX6
M04996_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Yin et al.(2017)
LHX6_FL_Methyl-HT-SELEX_3
0.630
0.526
LHX8
M05212_2.00
Homo sapiens
STAATYAN
NTRATTAS
SELEX
Yin et al.(2017)
LHX8_FL_Methyl-HT-SELEX_1
0.630
0.526
LHX8
M05213_2.00
Homo sapiens
NTAACGAB
VTCGTTAN
SELEX
Yin et al.(2017)
LHX8_FL_Methyl-HT-SELEX_2
0.630
0.526
LHX8
M05214_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Yin et al.(2017)
LHX8_FL_Methyl-HT-SELEX_3
0.630
0.526
Awh
M02121_2.00
Drosophila melanogaster
NNTAATTANN
NNTAATTANN
PBM
Weirauch et al.(2014)
pTH5759
0.627
0.491
Awh
M03831_2.00
Drosophila melanogaster
BTAATTRV
BYAATTAV
SELEX
Nitta et al.(2015)
Awh_1
0.627
0.491
Awh
M06513_2.00
Drosophila melanogaster
YTAATTA
TAATTAR
B1H
Mathelier et al.(2014)
MA0167.1
0.627
0.491
Awh
M06303_2.00
Drosophila melanogaster
YTAATTA
TAATTAR
B1H
Zhu et al.(2011)
Awh_Cell_FBgn0013751
0.627
0.491
Awh
M06304_2.00
Drosophila melanogaster
YTAATKR
YMATTAR
B1H
Zhu et al.(2011)
Awh_SOLEXA_FBgn0013751
0.627
0.491
lim-4
M02182_2.00
Caenorhabditis elegans
YTAATTRVN
NBYAATTAR
PBM
Weirauch et al.(2014)
pTH6366
0.623
0.491
CG9876
M03865_2.00
Drosophila melanogaster
SVTVATBRSN
NSYVATBABS
SELEX
Nitta et al.(2015)
CG9876_1
0.618
0.439
CG9876
M03866_2.00
Drosophila melanogaster
NTAATTRV
BYAATTAN
SELEX
Nitta et al.(2015)
CG9876_2
0.618
0.439
CG9876
M03867_2.00
Drosophila melanogaster
TAATYTAATTA
TAATTARATTA
SELEX
Nitta et al.(2015)
CG9876_3
0.618
0.439
CG9876
M03868_2.00
Drosophila melanogaster
TAATTRVNTAATTR
YAATTANBYAATTA
SELEX
Nitta et al.(2015)
CG9876_4
0.618
0.439
CG9876
M06537_2.00
Drosophila melanogaster
BTAATTR
YAATTAV
B1H
Mathelier et al.(2014)
MA0184.1
0.618
0.439
CG9876
M06350_2.00
Drosophila melanogaster
DBTAATTR
YAATTAVH
B1H
Zhu et al.(2011)
CG9876_Cell_FBgn0034821
0.618
0.439
CG9876
M06351_2.00
Drosophila melanogaster
HTAATTR
YAATTAD
B1H
Zhu et al.(2011)
CG9876_SOLEXA_FBgn0034821
0.618
0.439
ZFHX2
M02089_2.00
Homo sapiens
NNTRATYANN
NNTRATYANN
PBM
Weirauch et al.(2014)
pTH5642
0.607
0.404
Prrx1
M00431_2.00
Mus musculus
TAATTRNN
NNYAATTA
PBM
Berger et al.(2008)
Prrx1_3442
0.606
0.439
PRRX1
M03120_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
PRRX1_1
0.606
0.439
PRRX1
M03121_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
PRRX1_2
0.606
0.439
PRRX1
M03122_2.00
Homo sapiens
TAATTVRRTTA
TAAYYBAATTA
SELEX
Jolma et al.(2013)
PRRX1_3
0.606
0.439
Prrx1
M10770_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PMX1_01
0.606
0.439
PRRX1
M10675_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PMX1_Q6
0.606
0.439
Prrx2
M00486_2.00
Mus musculus
WRATNNN
NNNATYW
PBM
Berger et al.(2008)
Prrx2_3072
0.606
0.421
PRRX2
M03200_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
PRRX2_1
0.606
0.421
Prrx2
M03277_2.00
Mus musculus
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
Prrx2_1
0.606
0.421
PRRX2
M05262_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
PRRX2_FL_HT-SELEX
0.606
0.421
PRRX2
M05258_2.00
Homo sapiens
NTNAYGHN
NDCRTNAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_HT-SELEX_1
0.606
0.421
PRRX2
M05259_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_HT-SELEX_2
0.606
0.421
PRRX2
M09156_2.00
Homo sapiens
HTAATTR
YAATTAD
Misc
Kulakovskiy et al.(2013)
PRRX2_HUMAN.H11MO.0.C
0.606
0.421
Prrx2
M09207_2.00
Mus musculus
HTAATTR
YAATTAD
Misc
Kulakovskiy et al.(2013)
PRRX2_MOUSE.H11MO.0.C
0.606
0.421
PRRX2
M10735_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRRX2_05
0.606
0.421
PRRX2
M10776_2.00
Sus scrofa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRX2_Q2
0.606
0.421
Prrx2
M10767_2.00
Mus musculus
HNVHTAATTRRNHNDW
WHNDNYYAATTADBND
Transfac
Matys et al.(2006)
V$S8_01
0.606
0.421
PRRX2
M05260_2.00
Homo sapiens
NTAAYGHN
NDCRTTAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_Methyl-HT-SELEX_1
0.606
0.421
PRRX2
M05261_2.00
Homo sapiens
NTAATYRN
NYRATTAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_Methyl-HT-SELEX_2
0.606
0.421
PRRX2
M05263_2.00
Homo sapiens
NTAATTRR
YYAATTAN
SELEX
Yin et al.(2017)
PRRX2_FL_Methyl-HT-SELEX_1
0.606
0.421
PRRX2
M05264_2.00
Homo sapiens
HTAAYGHN
NDCRTTAD
SELEX
Yin et al.(2017)
PRRX2_FL_Methyl-HT-SELEX_2
0.606
0.421
zfhx4
M02108_2.00
Tetraodon nigroviridis
NNTAATTRN
NYAATTANN
PBM
Weirauch et al.(2014)
pTH5654
0.606
0.386
Lhx3
M00435_2.00
Mus musculus
NNNYAATHW
WDATTRNNN
PBM
Berger et al.(2008)
Lhx3_3431
0.605
0.439
Lim3
M02116_2.00
Drosophila melanogaster
NNNNNATBRN
NYVATNNNNN
PBM
Weirauch et al.(2014)
pTH6478
0.605
0.439
Lim3
M03796_2.00
Drosophila melanogaster
BTAATTAV
BTAATTAV
SELEX
Nitta et al.(2015)
Lim3_1
0.605
0.439
Lim3
M06492_2.00
Drosophila melanogaster
HTAATKA
TMATTAD
B1H
Mathelier et al.(2014)
MA0195.1
0.605
0.439
Lim3
M06258_2.00
Drosophila melanogaster
HHTAATKA
TMATTADD
B1H
Zhu et al.(2011)
Lim3_Cell_FBgn0002023
0.605
0.439
Lim3
M06259_2.00
Drosophila melanogaster
HTRATTR
YAATYAD
B1H
Zhu et al.(2011)
Lim3_SOLEXA_FBgn0002023
0.605
0.439
Lhx3
M02687_2.00
Mus musculus
VRWTAATTAATTW
WAATTAATTAWYB
SELEX
Mathelier et al.(2014)
MA0135.1
0.605
0.439
LHX3
M09137_2.00
Homo sapiens
NYTAATTAAWTHH
DDAWTTAATTARN
Misc
Kulakovskiy et al.(2013)
LHX3_HUMAN.H11MO.0.C
0.605
0.439
Lhx3
M09188_2.00
Mus musculus
NYTRATKRV
BYMATYARN
Misc
Kulakovskiy et al.(2013)
LHX3_MOUSE.H11MO.0.C
0.605
0.439
Lhx3
M09570_2.00
Mus musculus
NNBTAATTAV
BTAATTAVNN
Misc
Heinz et al.(2010)
Neuron-Lhx3_GSE31456
0.605
0.439
LHX3
M10657_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX3A_01
0.605
0.439
LHX3
M10658_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX3b_01
0.605
0.439
LHX3
M10659_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX3_Q3
0.605
0.439
Lhx4
M00430_2.00
Mus musculus
NYAATHN
NDATTRN
PBM
Berger et al.(2008)
Lhx4_1719
0.605
0.421
Lhx4
M03257_2.00
Mus musculus
BTAATTRN
NYAATTAV
SELEX
Jolma et al.(2013)
Lhx4_1
0.605
0.421
LHX4
M05063_2.00
Homo sapiens
BYAATYRV
BYRATTRV
SELEX
Yin et al.(2017)
LHX4_eDBD_HT-SELEX
0.605
0.421
LHX4
M05066_2.00
Homo sapiens
BTAATTAN
NTAATTAV
SELEX
Yin et al.(2017)
LHX4_FL_HT-SELEX
0.605
0.421
LHX4
M05064_2.00
Homo sapiens
BYAATTRV
BYAATTRV
SELEX
Yin et al.(2017)
LHX4_eDBD_Methyl-HT-SELEX_1
0.605
0.421
LHX4
M05065_2.00
Homo sapiens
NTWAYGHN
NDCRTWAN
SELEX
Yin et al.(2017)
LHX4_eDBD_Methyl-HT-SELEX_2
0.605
0.421
LHX4
M05067_2.00
Homo sapiens
NYAATTRN
NYAATTRN
SELEX
Yin et al.(2017)
LHX4_FL_Methyl-HT-SELEX_1
0.605
0.421
LHX4
M05068_2.00
Homo sapiens
NTAAYGHN
NDCRTTAN
SELEX
Yin et al.(2017)
LHX4_FL_Methyl-HT-SELEX_2
0.605
0.421
C4B866_NEMVE
M02052_2.00
Nematostella vectensis
NNTTAATTARNN
NNYTAATTAANN
PBM
Weirauch et al.(2014)
pTH6176
0.603
0.404
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOPRP00000007820
Homeodomain
227
283
KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNVRNNFRR
Links
Other
Homeodomain
family TFs
Other
Ochotona princeps
TFs
984 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy