CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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pbx3b
(
Oryzias latipes
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSORLG00000013269
T213942_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PBX3
M08132_2.00
Homo sapiens
NNNTGAGTGACAGSNNN
NNNSCTGTCACTCANNN
ChIP-seq
Mathelier et al.(2014)
MA1114.1
0.831
0.951
PBX3
M07971_2.00
Homo sapiens
NNBDRCCAATSRVVD
HBBYSATTGGYHVNN
ChIP-seq
Gerstein et al.(2012)
GM12878_PBX3_HudsonAlpha
0.831
0.951
PBX3
M09155_2.00
Homo sapiens
DGABKGRCRGB
VCYGYCMVTCH
Misc
Kulakovskiy et al.(2013)
PBX3_HUMAN.H11MO.0.A
0.831
0.951
PBX3
M09560_2.00
Homo sapiens
NTGABTGACAGB
VCTGTCAVTCAN
Misc
Heinz et al.(2010)
GM12878-PBX3_GSE32465
0.831
0.951
PBX3
M10732_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX3_02
0.831
0.951
PBX3
M10733_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX3_03
0.831
0.951
PBX3
M10734_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX3_04
0.831
0.951
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000016625
Homeodomain
236
281
RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQ
ENSORLP00000016625
Homeodomain
300
317
MPSIVSNWFGNKRIRYKK
Links
Other
Homeodomain
family TFs
Other
Oryzias latipes
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSP00000362586
Macaca fascicularis
ENSP00000362586
I
0.856
TsM_000683000
Taenia solium
TsM_000683000
I
0.853
PBX1
Oryctolagus cuniculus
ENSOCUG00000007609
I
0.845
ENSP00000362586-D3
Bos grunniens
ENSP00000362586-D3
I
0.839
pbx3b
Gasterosteus aculeatus
ENSGACG00000011999
I
0.835
PBX3
Homo sapiens
ENSG00000167081
D
0.831
PBX3
Procavia capensis
ENSPCAG00000006303
I
0.831
PBX3
Pteropus vampyrus
ENSPVAG00000000742
I
0.821
ENSNLEG00000017398
Nomascus leucogenys
ENSNLEG00000017398
I
0.821
PBX3
Gorilla gorilla
ENSGGOG00000009025
I
0.821
PBX1
Myotis lucifugus
ENSMLUG00000006941
I
0.819
ENSAMEG00000016625
Ailuropoda melanoleuca
ENSAMEG00000016625
I
0.811
pbx3b
Takifugu rubripes
ENSTRUG00000008751
I
0.804
PBX2
Echinops telfairi
ENSETEG00000018718
I
0.782
maker-nMf.1.1.scaf02297-augustus-gene-0.11
Meloidogyne floridensis
maker-nMf.1.1.scaf02297-augustus-gene-0.11
I
0.708
ENSDORG00000000463
Dipodomys ordii
ENSDORG00000000463
I
0.681
CRE23691
Caenorhabditis remanei
CRE23691
I
0.676
CapteG223738
Capitella teleta
CapteG223738
I
0.671
PBX3
Echinops telfairi
ENSETEG00000012611
I
0.666
BGLB003173
Biomphalaria glabrata
BGLB003173
I
0.626
KGM_17712
Danaus plexippus
KGM_17712
N
0.603