hoxb13a (Oryzias latipes)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSORLG00000017031 T213973_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HOXB13
M02092_2.00
Homo sapiens
NTTWAYDDNN

NNHHRTWAAN
PBM
Weirauch et al.(2014)
pTH5808
0.851 0.895
Hoxb13
M00505_2.00
Mus musculus
NTTWAYDDNN

NNHHRTWAAN
PBM
Berger et al.(2008)
Hoxb13_3479
0.851 0.895
HOXB13
M03175_2.00
Homo sapiens
DTTTTATKGG

CCMATAAAAH
SELEX
Jolma et al.(2013)
HOXB13_1
0.851 0.895
HOXB13
M03176_2.00
Homo sapiens
BCTCGTAAAAH

DTTTTACGAGV
SELEX
Jolma et al.(2013)
HOXB13_2
0.851 0.895
HOXB13
M05201_2.00
Homo sapiens
DTTTTATKGGN

NCCMATAAAAH
SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_1
0.851 0.895
HOXB13
M05202_2.00
Homo sapiens
NCTCGTAAAHH

DDTTTACGAGN
SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_2
0.851 0.895
HOXB13
M09149_2.00
Homo sapiens
TTTTATDRSN

NSYHATAAAA
Misc
Kulakovskiy et al.(2013)
HXB13_HUMAN.H11MO.0.A
0.851 0.895
HOXB13
M05203_2.00
Homo sapiens
NCTCGTAAAAH

DTTTTACGAGN
SELEX
Yin et al.(2017)
HOXB13_eDBD_Methyl-HT-SELEX
0.851 0.895
Hoxc13
M00389_2.00
Mus musculus
NTTWAYDRNN

NNYHRTWAAN
PBM
Berger et al.(2008)
Hoxc13_3127
0.716 0.877
HOXC13
M03129_2.00
Homo sapiens
NTTTTATTRS

SYAATAAAAN
SELEX
Jolma et al.(2013)
HOXC13_1
0.716 0.877
HOXC13
M03130_2.00
Homo sapiens
NCTCGTAAAAH

DTTTTACGAGN
SELEX
Jolma et al.(2013)
HOXC13_2
0.716 0.877
HOXC13
M05072_2.00
Homo sapiens
RKTTTATKGSN

NSCMATAAAMY
SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_1
0.716 0.877
HOXC13
M05073_2.00
Homo sapiens
BCTCGTAAAMH

DKTTTACGAGV
SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_2
0.716 0.877
HOXC13
M10680_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXC13_Q2
0.716 0.877
HOXC13
M05074_2.00
Homo sapiens
BCTCGTAAAAH

DTTTTACGAGV
SELEX
Yin et al.(2017)
HOXC13_eDBD_Methyl-HT-SELEX
0.716 0.877
Hoxa13
M00473_2.00
Mus musculus
NTTWAYDRN

NYHRTWAAN
PBM
Berger et al.(2008)
Hoxa13_3126
0.712 0.877
HOXA13
M03098_2.00
Homo sapiens
DKTTTATKRS

SYMATAAAMH
SELEX
Jolma et al.(2013)
HOXA13_1
0.712 0.877
HOXA13
M03099_2.00
Homo sapiens
NCTCGTAAAHN

NDTTTACGAGN
SELEX
Jolma et al.(2013)
HOXA13_2
0.712 0.877
HOXA13
M03100_2.00
Homo sapiens
DKTTTATKRS

SYMATAAAMH
SELEX
Jolma et al.(2013)
HOXA13_3
0.712 0.877
HOXA13
M03101_2.00
Homo sapiens
NCTCGTAAAAH

DTTTTACGAGN
SELEX
Jolma et al.(2013)
HOXA13_4
0.712 0.877
HOXA13
M04977_2.00
Homo sapiens
DTTTTATKGGB

VCCMATAAAAH
SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_1
0.712 0.877
HOXA13
M04978_2.00
Homo sapiens
NCTCGTAAAHN

NDTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_2
0.712 0.877
HOXA13
M04981_2.00
Homo sapiens
DTTTTATKRSN

NSYMATAAAAH
SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_1
0.712 0.877
HOXA13
M04982_2.00
Homo sapiens
NCTCGTAAAWH

DWTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_2
0.712 0.877
HOXA13
M09134_2.00
Homo sapiens
VDTWTWATKGS

SCMATWAWAHB
Misc
Kulakovskiy et al.(2013)
HXA13_HUMAN.H11MO.0.C
0.712 0.877
Hoxa13
M09202_2.00
Mus musculus
VDTWTWATKGS

SCMATWAWAHB
Misc
Kulakovskiy et al.(2013)
HXA13_MOUSE.H11MO.0.C
0.712 0.877
HOXA13
M10653_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA13_01
0.712 0.877
HOXA13
M10654_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA13_02
0.712 0.877
HOXA13
M04979_2.00
Homo sapiens
DTTTTATTRSN

NSYAATAAAAH
SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_1
0.712 0.877
HOXA13
M04980_2.00
Homo sapiens
NCTCGTAAAHN

NDTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_2
0.712 0.877
HOXA13
M04983_2.00
Homo sapiens
DKTTTATTGBN

NVCAATAAAMH
SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_1
0.712 0.877
HOXA13
M04984_2.00
Homo sapiens
NCTCGTAAAWH

DWTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_2
0.712 0.877
HOXD13
M00299_2.00
Homo sapiens
NTTWAYDDN

NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_REF
0.696 0.842
Hoxd13
M00394_2.00
Mus musculus
NWTHRYDDN

NHHRYDAWN
PBM
Berger et al.(2008)
Hoxd13_2356
0.696 0.842
HOXD13
M03141_2.00
Homo sapiens
DTTTTATKRS

SYMATAAAAH
SELEX
Jolma et al.(2013)
HOXD13_1
0.696 0.842
HOXD13
M03142_2.00
Homo sapiens
BCTCGTAAAAH

DTTTTACGAGV
SELEX
Jolma et al.(2013)
HOXD13_2
0.696 0.842
Hoxd13
M03247_2.00
Mus musculus
DKTTTATTRS

SYAATAAAMH
SELEX
Jolma et al.(2013)
Hoxd13_1
0.696 0.842
Hoxd13
M03248_2.00
Mus musculus
DDTTTAYKAGN

NCTMRTAAAHH
SELEX
Jolma et al.(2013)
Hoxd13_2
0.696 0.842
HOXD13
M05122_2.00
Homo sapiens
GKTTTATKGSS

SSCMATAAAMC
SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_1
0.696 0.842
HOXD13
M05123_2.00
Homo sapiens
BCTCGTAAAMH

DKTTTACGAGV
SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_2
0.696 0.842
HOXD13
M10689_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD13_Q6
0.696 0.842
HOXD13
M00295_2.00
Homo sapiens
NTTWAYDDN

NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_N298S
0.696 0.842
HOXD13
M05124_2.00
Homo sapiens
DDTTTATTRBB

VVYAATAAAHH
SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_1
0.696 0.842
HOXD13
M05125_2.00
Homo sapiens
VCTCGTAAAAH

DTTTTACGAGB
SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_2
0.696 0.842
HOXD13
M00300_2.00
Homo sapiens
WTTTATDR

YHATAAAW
PBM
Barrera et al.(2016)
HOXD13_S316C
0.696 0.825
HOXD13
M00293_2.00
Homo sapiens
NTTWAYDDNN

NNHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_I297V
0.696 0.825
hoxd13a
M02081_2.00
Danio rerio
WTTTATDR

YHATAAAW
PBM
Weirauch et al.(2014)
pTH6143
0.694 0.754
HOXD13
M00298_2.00
Homo sapiens
NTTWAYDDN

NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_R306W
0.688 0.825
HOXD13
M00294_2.00
Homo sapiens
THGTWAAW

WTTWACDA
PBM
Barrera et al.(2016)
HOXD13_I322L
0.678 0.825
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000021307 Homeodomain 260 316

Links

Other Homeodomain family TFs
Other Oryzias latipes TFs

260 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BN7_3380 Wickerhamomyces ciferrii BN7_3380 I 0.000
CAGL0I07183g Candida glabrata CAGL0I07183g I 0.000
CANTEDRAFT_132848 Candida tenuis CANTEDRAFT_132848 I 0.000
DEHA2G10560g Debaryomyces hansenii DEHA2G10560g I 0.000
Ecym_2312 Eremothecium cymbalariae Ecym_2312 I 0.000
estExt_fgenesh1_pg.C_chr_6.10474 Pichia stipitis estExt_fgenesh1_pg.C_chr_6.10474 I 0.000
G210_0510 Candida maltosa G210_0510 I 0.000
KLLA0_E03191g Kluyveromyces lactis KLLA0_E03191g I 0.000
KUCA_T00005449001 Kuraishia capsulata KUCA_T00005449001 I 0.000
LELG_03188 Lodderomyces elongisporus LELG_03188 N 0.000
NCAS_0H02280 Naumovozyma castellii NCAS_0H02280 I 0.000
NDAI_0C01380 Naumovozyma dairenensis NDAI_0C01380 I 0.000
PGTG_02256 Puccinia graminis PGTG_02256 I 0.000
PICST_68146 Scheffersomyces stipitis PICST_68146 I 0.000
SAKL0G03586g Lachancea kluyveri SAKL0G03586g I 0.000
Scas_Contig714.29 Saccharomyces castellii Scas_Contig714.29 I 0.000
TDEL_0A03400 Torulaspora delbrueckii TDEL_0A03400 I 0.000
ZBAI_09477 Zygosaccharomyces bailii ZBAI_09477 I 0.000
ZYRO0D11286g Zygosaccharomyces rouxii ZYRO0D11286g I 0.000