SIX3 (Pan troglodytes)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSPTRG00000011887 T215060_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Six3
M00483_2.00
Mus musculus
NNNAYMN

NKRTNNN
PBM
Berger et al.(2008)
Six3_1732
0.867 1.000
SIX3
M05159_2.00
Homo sapiens
NNYGATABBN

NVVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX
0.867 1.000
SIX3
M10698_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX3_Q6
0.867 1.000
SIX3
M05160_2.00
Homo sapiens
NNYGATABVB

VBVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX
0.867 1.000
Optix
M02124_2.00
Drosophila melanogaster
NNNNNDATMN

NKATHNNNNN
PBM
Weirauch et al.(2014)
pTH5437
0.867 0.947
Optix
M03850_2.00
Drosophila melanogaster
TAATYTAATTA

TAATTARATTA
SELEX
Nitta et al.(2015)
Optix_1
0.867 0.947
Optix
M06526_2.00
Drosophila melanogaster
TGATA

TATCA
B1H
Mathelier et al.(2014)
MA0199.1
0.867 0.947
Optix
M06327_2.00
Drosophila melanogaster
HHVTGATA

TATCABDD
B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360
0.867 0.947
Optix
M06328_2.00
Drosophila melanogaster
NNNTGATA

TATCANNN
B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360
0.867 0.947
SIX6
M00326_2.00
Homo sapiens
NNDATMB

VKATHNN
PBM
Barrera et al.(2016)
SIX6_REF
0.865 0.982
Six6
M00169_2.00
Mus musculus
NNAYMNN

NNKRTNN
PBM
Badis et al.(2009)
Six6_2267
0.865 0.982
Six6
M00412_2.00
Mus musculus
NNNTGATAYCN

NGRTATCANNN
PBM
Berger et al.(2008)
Six6_2267
0.865 0.982
SIX6
M05357_2.00
Homo sapiens
NNYGATASVB

VBSTATCRNN
SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX
0.865 0.982
SIX6
M00325_2.00
Homo sapiens
NNNDATMB

VKATHNNN
PBM
Barrera et al.(2016)
SIX6_H141N
0.865 0.982
SIX6
M05358_2.00
Homo sapiens
VBVYAYCRNN

NNYGRTRBVB
SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX
0.865 0.982
six3
M02102_2.00
Oryzias latipes
NNDAYMBNNN

NNNVKRTHNN
PBM
Weirauch et al.(2014)
pTH5928
0.865 0.947
SIX6
M00327_2.00
Homo sapiens
NHDAYMBNN

NNVKRTHDN
PBM
Barrera et al.(2016)
SIX6_T165A
0.859 0.965
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000020406 Homeodomain 136 192

Links

Other Homeodomain family TFs
Other Pan troglodytes TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RKD2 Arabidopsis thaliana AT1G74480 D 0.000
PRUPE_ppa023107mg Prunus persica PRUPE_ppa023107mg I 0.000
Ca_13151 Cicer arietinum Ca_13151 I 0.000
Ca_27191 Cicer arietinum Ca_27191 I 0.000
Cla019404 Citrullus lanatus Cla019404 I 0.000
Pm024905 Prunus mume Pm024905 I 0.000
30138.m004071 Ricinus communis 30138.m004071 I 0.000
cassava35166.m1 Manihot esculenta cassava35166.m1 I 0.000
Cucsa.197700 Cucumis sativus Cucsa.197700 I 0.000
mg020279m Mimulus guttatus mg020279m I 0.000
VIT_17s0000g06250 Vitis vinifera VIT_17s0000g06250 I 0.000
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.000
Sb10g008120 Sorghum bicolor Sb10g008120 I 0.000
scaffold_103100001.1 Arabidopsis lyrata scaffold_103100001.1 I 0.000
Si008273m.g Setaria italica Si008273m.g I 0.000
Solyc03g116010.1 Solanum lycopersicum Solyc03g116010.1 I 0.000
TCM_014009 Theobroma cacao TCM_014009 I 0.000
Traes_6BL_301505440 Triticum aestivum Traes_6BL_301505440 I 0.000
Traes_6DL_8ECBBC867 Triticum aestivum Traes_6DL_8ECBBC867 I 0.000
Traes_7DS_405F08A53 Triticum aestivum Traes_7DS_405F08A53 I 0.000
mgf022310m Mimulus guttatus mgf022310m I 0.000
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I 0.000
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I 0.000
MDP0000266172 Malus domestica MDP0000266172 I 0.000
orange1.1g036926m.g Citrus sinensis orange1.1g036926m.g I 0.000
Pavir.Aa00708 Panicum virgatum Pavir.Aa00708 I 0.000
Pavir.Ab02992 Panicum virgatum Pavir.Ab02992 I 0.000
Pavir.Da01160 Panicum virgatum Pavir.Da01160 I 0.000
Pavir.J13146 Panicum virgatum Pavir.J13146 I 0.000
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.000
chr4.CM0087.990.nc Lotus japonicus chr4.CM0087.990.nc I 0.000
MDP0000261199 Malus domestica MDP0000261199 I 0.000
Lus10035008.g Linum usitatissimum Lus10035008.g I 0.000
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I 0.000
Carubv10011133m.g Capsella rubella Carubv10011133m.g I 0.000
evm.TU.supercontig_423.7 Carica papaya evm.TU.supercontig_423.7 I 0.000
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I 0.000
Gorai.006G266900 Gossypium raimondii Gorai.006G266900 I 0.000
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I 0.000
Lus10019100.g Linum usitatissimum Lus10019100.g I 0.000
Lus10034456.g Linum usitatissimum Lus10034456.g I 0.000
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.000
RKD1 Arabidopsis thaliana AT1G18790 I 0.000
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.000
fgenesh1_pg.C_scaffold_8002648 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002648 I 0.000
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.000
GLYMA05G01030 Glycine max GLYMA05G01030 I 0.000
GLYMA06G20881 Glycine max GLYMA06G20881 I 0.000
GLYMA17G10866 Glycine max GLYMA17G10866 I 0.000
GRMZM2G392306 Zea mays GRMZM2G392306 I 0.000
GLYMA04G33516 Glycine max GLYMA04G33516 I 0.000
fgenesh1_pg.C_scaffold_2000886 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000886 I 0.000
F775_07483 Aegilops tauschii F775_07483 I 0.000
F775_00225 Aegilops tauschii F775_00225 I 0.000
BGIOSGA005630 Oryza indica BGIOSGA005630 I 0.000
BGIOSGA022580 Oryza indica BGIOSGA022580 I 0.000
Bo7g064180 Brassica oleracea Bo7g064180 I 0.000
Bo8g068090 Brassica oleracea Bo8g068090 I 0.000
Bra008153 Brassica rapa Bra008153 I 0.000
Bra012122 Brassica rapa Bra012122 I 0.000
Bra015907 Brassica rapa Bra015907 I 0.000
Bra016542 Brassica rapa Bra016542 I 0.000
LPERR06G07570 Leersia perrieri LPERR06G07570 I 0.000
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.000
ONIVA06G04700 Oryza nivara ONIVA06G04700 I 0.000
ONIVA06G09450 Oryza nivara ONIVA06G09450 I 0.000
OPUNC02G29870 Oryza punctata OPUNC02G29870 I 0.000
OPUNC06G07940 Oryza punctata OPUNC06G07940 I 0.000
ORGLA02G0278600 Oryza glaberrima ORGLA02G0278600 I 0.000
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I 0.000
ORUFI02G34010 Oryza rufipogon ORUFI02G34010 I 0.000
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I 0.000
OMERI06G09770 Oryza meridionalis OMERI06G09770 I 0.000
OMERI02G30990 Oryza meridionalis OMERI02G30990 I 0.000
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.000
MTR_3g435550 Medicago truncatula MTR_3g435550 I 0.000
OS06G0228950 Oryza sativa OS06G0228950 I 0.000
OB02G39310 Oryza brachyantha OB02G39310 I 0.000
OB06G17750 Oryza brachyantha OB06G17750 I 0.000
OBART02G32320 Oryza barthii OBART02G32320 I 0.000
OGLUM02G32960 Oryza glumaepatula OGLUM02G32960 I 0.000
OLONG_016325 Oryza longistaminata OLONG_016325 I 0.000
Bostr.0568s0123 Boechera stricta Bostr.0568s0123 N 0.000
SELMODRAFT_73109 Selaginella moellendorffii SELMODRAFT_73109 N 0.000
Thhalv10005560m.g Eutrema salsugineum Thhalv10005560m.g N 0.000
RKD3 Arabidopsis thaliana AT5G66990 N 0.000
SELMODRAFT_73110 Selaginella moellendorffii SELMODRAFT_73110 N 0.000