CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Hoxb9
(
Rattus norvegicus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSRNOG00000007573
T215363_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to contribute to RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including cell chemotaxis; embryonic skeletal system morphogenesis; and regionalization. Predicted to act upstream of or within embryonic skeletal system development; mammary gland development; and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be part of RNA polymerase II transcription regulator complex. Predicted to be active in nucleus. Orthologous to human HOXB9 (homeobox B9). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hoxb9
M00410_2.00
Mus musculus
NTTWAYDDNN
NNHHRTWAAN
PBM
Berger et al.(2008)
Hoxb9_3413
0.867
1.000
HOXB9
M05289_2.00
Homo sapiens
RTCRTAAAWN
NWTTTAYGAY
SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_1
0.867
1.000
HOXB9
M05290_2.00
Homo sapiens
NTTTWATKRC
GYMATWAAAN
SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_2
0.867
1.000
HOXB9
M05291_2.00
Homo sapiens
GTCGTAAAHB
VDTTTACGAC
SELEX
Yin et al.(2017)
HOXB9_eDBD_Methyl-HT-SELEX
0.867
1.000
Hoxa9
M00475_2.00
Mus musculus
NNDDBNNN
NNNVHHNN
PBM
Berger et al.(2008)
Hoxa9_2622
0.867
0.947
HOXA9
M03085_2.00
Homo sapiens
NNDTTWAYGAYN
NRTCRTWAAHNN
SELEX
Jolma et al.(2013)
HOXA10_1
0.867
0.947
HOXA9
M03086_2.00
Homo sapiens
NDTTWATKRYN
NRYMATWAAHN
SELEX
Jolma et al.(2013)
HOXA10_2
0.867
0.947
HOXA9
M04932_2.00
Homo sapiens
NNDWWABKRC
GYMVTWWHNN
SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_1
0.867
0.947
HOXA9
M04933_2.00
Homo sapiens
NNDTWAYGRB
VYCRTWAHNN
SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_2
0.867
0.947
Hoxa9
M08138_2.00
Mus musculus
TGATTKATKRB
VYMATMAATCA
ChIP-seq
Mathelier et al.(2014)
MA0594.1
0.867
0.947
HOXA9
M09130_2.00
Homo sapiens
DCATAAAYYRBH
DVYRRTTTATGH
Misc
Kulakovskiy et al.(2013)
HXA10_HUMAN.H11MO.0.C
0.867
0.947
HOXA9
M09131_2.00
Homo sapiens
HHATAAATCAH
DTGATTTATDD
Misc
Kulakovskiy et al.(2013)
HXA9_HUMAN.H11MO.0.B
0.867
0.947
Hoxa9
M09203_2.00
Mus musculus
HHATAAATCAH
DTGATTTATDD
Misc
Kulakovskiy et al.(2013)
HXA9_MOUSE.H11MO.0.B
0.867
0.947
Hoxa9
M09575_2.00
Mus musculus
WGATTKATDRBY
RVYHATMAATCW
Misc
Heinz et al.(2010)
HSC-Hoxa9_GSE33509
0.867
0.947
HOXA9
M10642_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA10_Q6
0.867
0.947
HOXA9
M10643_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA9_04
0.867
0.947
HOXA9
M10644_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA9_Q5_01
0.867
0.947
HOXA9
M10645_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA9_Q5
0.867
0.947
HOXA9
M04934_2.00
Homo sapiens
NNDTWAYKRC
GYMRTWAHNN
SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_1
0.867
0.947
HOXA9
M04935_2.00
Homo sapiens
NNDTWACGAY
RTCGTWAHNN
SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_2
0.867
0.947
Hoxd9
M03282_2.00
Mus musculus
TTTWATKKB
VMMATWAAA
SELEX
Jolma et al.(2013)
Hoxd9_1
0.855
0.947
Hoxd9
M03283_2.00
Mus musculus
DWTTWATKRY
RYMATWAAWH
SELEX
Jolma et al.(2013)
Hoxd9_2
0.855
0.947
Hoxd9
M03284_2.00
Mus musculus
DTTWAYGRB
VYCRTWAAH
SELEX
Jolma et al.(2013)
Hoxd9_3
0.855
0.947
HOXC9
M05331_2.00
Homo sapiens
GTCGTAAAAN
NTTTTACGAC
SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_1
0.855
0.947
HOXC9
M05332_2.00
Homo sapiens
NTTTTATKRC
GYMATAAAAN
SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_2
0.855
0.947
HOXD9
M05104_2.00
Homo sapiens
NTTTTATKRC
GYMATAAAAN
SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_1
0.855
0.947
HOXD9
M05105_2.00
Homo sapiens
RTCRTAAAWN
NWTTTAYGAY
SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_2
0.855
0.947
HOXD9
M05108_2.00
Homo sapiens
RTCGTAAAWN
NWTTTACGAY
SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_1
0.855
0.947
HOXD9
M05109_2.00
Homo sapiens
NTTTTATKRC
GYMATAAAAN
SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_2
0.855
0.947
HOXC9
M09161_2.00
Homo sapiens
HTTWATKGCH
DGCMATWAAD
Misc
Kulakovskiy et al.(2013)
HXC9_HUMAN.H11MO.0.C
0.855
0.947
HOXD9
M10686_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD9_Q2
0.855
0.947
HOXC9
M05333_2.00
Homo sapiens
RTCGTAAAHN
NDTTTACGAY
SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_1
0.855
0.947
HOXC9
M05334_2.00
Homo sapiens
NTTTWATKRC
GYMATWAAAN
SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_2
0.855
0.947
HOXD9
M05106_2.00
Homo sapiens
NNTTWATKRC
GYMATWAANN
SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_1
0.855
0.947
HOXD9
M05107_2.00
Homo sapiens
RTCGTAAANN
NNTTTACGAY
SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_2
0.855
0.947
HOXD9
M05110_2.00
Homo sapiens
RTCGTAAANN
NNTTTACGAY
SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_1
0.855
0.947
HOXD9
M05111_2.00
Homo sapiens
NDTTWATKRC
GYMATWAAHN
SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_2
0.855
0.947
Hoxc9
M00470_2.00
Mus musculus
NGTAATWAAN
NTTWATTACN
PBM
Berger et al.(2008)
Hoxc9_2367
0.846
0.930
Hoxc9
M08137_2.00
Mus musculus
NWGATTTATDGSH
DSCHATAAATCWN
ChIP-seq
Mathelier et al.(2014)
MA0485.1
0.846
0.930
Hoxc9
M09574_2.00
Mus musculus
TGATTTATDGCH
DGCHATAAATCA
Misc
Heinz et al.(2010)
Ainv15-Hoxc9_GSE21812
0.846
0.930
Hoxc10
M00421_2.00
Mus musculus
TTWATKAB
VTMATWAA
PBM
Berger et al.(2008)
Hoxc10_2779
0.806
0.807
Hoxd10
M00509_2.00
Mus musculus
NNNNNNNN
NNNNNNNN
PBM
Berger et al.(2008)
Hoxd10_2368
0.806
0.807
HOXC10
M03228_2.00
Homo sapiens
DTTTWATKDB
VHMATWAAAH
SELEX
Jolma et al.(2013)
HOXC10_1
0.806
0.807
HOXC10
M03229_2.00
Homo sapiens
NNTTWATKRB
VYMATWAANN
SELEX
Jolma et al.(2013)
HOXC10_2
0.806
0.807
HOXC10
M03230_2.00
Homo sapiens
NWTTWAYGAB
VTCRTWAAWN
SELEX
Jolma et al.(2013)
HOXC10_3
0.806
0.807
Hoxc10
M03252_2.00
Mus musculus
DTTTWAYGAY
RTCRTWAAAH
SELEX
Jolma et al.(2013)
Hoxc10_1
0.806
0.807
Hoxc10
M03253_2.00
Mus musculus
DTTTWATKRY
RYMATWAAAH
SELEX
Jolma et al.(2013)
Hoxc10_2
0.806
0.807
HOXC10
M05335_2.00
Homo sapiens
NDTTTATKRCN
NGYMATAAAHN
SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_1
0.806
0.807
HOXC10
M05336_2.00
Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_2
0.806
0.807
HOXC10
M05339_2.00
Homo sapiens
NTTTTATKRCN
NGYMATAAAAN
SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_1
0.806
0.807
HOXC10
M05340_2.00
Homo sapiens
NRTCGTAAAWN
NWTTTACGAYN
SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_2
0.806
0.807
HOXD10
M05112_2.00
Homo sapiens
NKTTTATKRC
GYMATAAAMN
SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_1
0.806
0.807
HOXD10
M05113_2.00
Homo sapiens
RTCGTAAAHN
NDTTTACGAY
SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_2
0.806
0.807
HOXD10
M05116_2.00
Homo sapiens
RGTCGTAAAAH
DTTTTACGACY
SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_1
0.806
0.807
HOXD10
M05117_2.00
Homo sapiens
RRYMATAAAAH
DTTTTATKRYY
SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_2
0.806
0.807
HOXD10
M10687_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD10_Q2
0.806
0.807
HOXD10
M10688_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD10_Q6
0.806
0.807
HOXC10
M05337_2.00
Homo sapiens
NTTTTATKRCN
NGYMATAAAAN
SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_1
0.806
0.807
HOXC10
M05338_2.00
Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_2
0.806
0.807
HOXC10
M05341_2.00
Homo sapiens
DTTTTATKRCH
DGYMATAAAAH
SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_1
0.806
0.807
HOXC10
M05342_2.00
Homo sapiens
VGTCGTAAAHN
NDTTTACGACB
SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_2
0.806
0.807
HOXD10
M05114_2.00
Homo sapiens
NTTTTATKRC
GYMATAAAAN
SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_1
0.806
0.807
HOXD10
M05115_2.00
Homo sapiens
GTCGTAAAHN
NDTTTACGAC
SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_2
0.806
0.807
HOXD10
M05118_2.00
Homo sapiens
VGTCGTAAAAH
DTTTTACGACB
SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_1
0.806
0.807
HOXD10
M05119_2.00
Homo sapiens
DGYAATAAAAH
DTTTTATTRCH
SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_2
0.806
0.807
Hoxa10
M00382_2.00
Mus musculus
NHWAYNNNN
NNNNRTWDN
PBM
Berger et al.(2008)
Hoxa10_2318
0.804
0.807
HOXA10
M05394_2.00
Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY
SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_1
0.804
0.807
HOXA10
M05395_2.00
Homo sapiens
NTTTTATKRCY
RGYMATAAAAN
SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_2
0.804
0.807
HOXA10
M05398_2.00
Homo sapiens
NRTCRTWAANN
NNTTWAYGAYN
SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_1
0.804
0.807
HOXA10
M05399_2.00
Homo sapiens
NNTTWATKRCN
NGYMATWAANN
SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_2
0.804
0.807
Hoxa10
M09170_2.00
Mus musculus
DCATAAAYYRBH
DVYRRTTTATGH
Misc
Kulakovskiy et al.(2013)
HXA10_MOUSE.H11MO.0.C
0.804
0.807
Hoxa10
M10763_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA10_Q5
0.804
0.807
HOXA10
M05396_2.00
Homo sapiens
NGTCGTAAAWN
NWTTTACGACN
SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_1
0.804
0.807
HOXA10
M05397_2.00
Homo sapiens
NTTTTATKRCB
VGYMATAAAAN
SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_2
0.804
0.807
HOXA10
M05400_2.00
Homo sapiens
NRTCGTWAANN
NNTTWACGAYN
SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_1
0.804
0.807
HOXA10
M05401_2.00
Homo sapiens
NNTTWATKRYN
NRYMATWAANN
SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_2
0.804
0.807
Hoxd11
M00493_2.00
Mus musculus
DDDNNNNN
NNNNNHHH
PBM
Berger et al.(2008)
Hoxd11_3873
0.750
0.684
HOXD11
M03139_2.00
Homo sapiens
RTCGTAAAWH
DWTTTACGAY
SELEX
Jolma et al.(2013)
HOXD11_1
0.750
0.684
HOXD11
M03140_2.00
Homo sapiens
TTTWATKRBH
DVYMATWAAA
SELEX
Jolma et al.(2013)
HOXD11_2
0.750
0.684
HOXD11
M05120_2.00
Homo sapiens
NRTCGTWAANNDTWAH
DTWAHNNTTWACGAYN
SELEX
Yin et al.(2017)
HOXD11_eDBD_HT-SELEX
0.750
0.684
HOXD11
M05121_2.00
Homo sapiens
NRTCGTWAAHNDTWAH
DTWAHNDTTWACGAYN
SELEX
Yin et al.(2017)
HOXD11_eDBD_Methyl-HT-SELEX
0.750
0.684
Hoxa11
M00474_2.00
Mus musculus
NNHNHNNNN
NNNNDNDNN
PBM
Berger et al.(2008)
Hoxa11_2218
0.750
0.667
Hoxa11
M03274_2.00
Mus musculus
NNDTTWAYGABN
NVTCRTWAAHNN
SELEX
Jolma et al.(2013)
Hoxa11_1
0.750
0.667
Hoxa11
M03275_2.00
Mus musculus
NDTTWATKRNN
NNYMATWAAHN
SELEX
Jolma et al.(2013)
Hoxa11_2
0.750
0.667
HOXA11
M04897_2.00
Homo sapiens
VGTCGTAAAWH
DWTTTACGACB
SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_1
0.750
0.667
HOXA11
M04898_2.00
Homo sapiens
DDTTWATKRSN
NSYMATWAAHH
SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_2
0.750
0.667
HOXA11
M04899_2.00
Homo sapiens
NRTCGTAAAWH
DWTTTACGAYN
SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_1
0.750
0.667
HOXA11
M04900_2.00
Homo sapiens
DYTTTATKRCH
DGYMATAAARH
SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_2
0.750
0.667
Hoxc11
M00390_2.00
Mus musculus
NTTWAYDDBN
NVHHRTWAAN
PBM
Berger et al.(2008)
Hoxc11_3718
0.750
0.649
HOXC11
M03131_2.00
Homo sapiens
NWTTWAYGAYH
DRTCRTWAAWN
SELEX
Jolma et al.(2013)
HOXC11_1
0.750
0.649
HOXC11
M03132_2.00
Homo sapiens
NWTTWATKRBH
DVYMATWAAWN
SELEX
Jolma et al.(2013)
HOXC11_2
0.750
0.649
HOXC11
M03133_2.00
Homo sapiens
DRTCGTWAAWN
NWTTWACGAYH
SELEX
Jolma et al.(2013)
HOXC11_3
0.750
0.649
HOXC11
M03134_2.00
Homo sapiens
NTTTTATKRBN
NVYMATAAAAN
SELEX
Jolma et al.(2013)
HOXC11_4
0.750
0.649
HOXC11
M05075_2.00
Homo sapiens
NDTTWACGAYN
NRTCGTWAAHN
SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_1
0.750
0.649
HOXC11
M05076_2.00
Homo sapiens
NWTTWATKRCH
DGYMATWAAWN
SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_2
0.750
0.649
HOXC11
M05079_2.00
Homo sapiens
NRTCGTWAAHN
NDTTWACGAYN
SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_1
0.750
0.649
HOXC11
M05080_2.00
Homo sapiens
NDTTWATKRSN
NSYMATWAAHN
SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_2
0.750
0.649
HOXC11
M05077_2.00
Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_1
0.750
0.649
HOXC11
M05078_2.00
Homo sapiens
NDTTTATKRSN
NSYMATAAAHN
SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_2
0.750
0.649
HOXC11
M05081_2.00
Homo sapiens
NRTCGTWAANN
NNTTWACGAYN
SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_1
0.750
0.649
HOXC11
M05082_2.00
Homo sapiens
NNTTWAYKRSN
NSYMRTWAANN
SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_2
0.750
0.649
Abd-B
M00554_2.00
Drosophila melanogaster
NWTWAYDDNN
NNHHRTWAWN
PBM
Busser et al.(2012a)
Abd-B
0.679
0.737
Abd-B
M03772_2.00
Drosophila melanogaster
DRTCRTAAAWH
DWTTTAYGAYH
SELEX
Nitta et al.(2015)
Abd-B_1
0.679
0.737
Abd-B
M03773_2.00
Drosophila melanogaster
DTTTTATKRCY
RGYMATAAAAH
SELEX
Nitta et al.(2015)
Abd-B_2
0.679
0.737
Abd-B
M03774_2.00
Drosophila melanogaster
NKCARYAACGACYW
WRGTCGTTRYTGMN
SELEX
Nitta et al.(2015)
Abd-B_3
0.679
0.737
Abd-B
M03775_2.00
Drosophila melanogaster
DTTTWATGKSTTTY
RAAASMCATWAAAH
SELEX
Nitta et al.(2015)
Abd-B_4
0.679
0.737
Abd-B
M06476_2.00
Drosophila melanogaster
TTTATKR
YMATAAA
B1H
Mathelier et al.(2014)
MA0165.1
0.679
0.737
Abd-B
M06211_2.00
Drosophila melanogaster
YCATAAAA
TTTTATGR
B1H
Zhu et al.(2011)
Abd-B_FlyReg_FBgn0000015
0.679
0.737
Abd-B
M09672_2.00
Drosophila melanogaster
YMATAAAAHH
DDTTTTATKR
Misc
Kulakovskiy et al.(2009)
Abd-B
0.679
0.737
Abd-B
M10779_2.00
Drosophila melanogaster
VSNTTDATKRCNNN
NNNGYMATHAANSB
Transfac
Matys et al.(2006)
I$ABDB_01
0.679
0.737
Abd-B
M10780_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$ABDB_Q6
0.679
0.737
Hoxc8
M00391_2.00
Mus musculus
NNDNYNNNN
NNNNRNHNN
PBM
Berger et al.(2008)
Hoxc8_3429
0.634
0.737
Hoxb8
M00517_2.00
Mus musculus
NWWAYNDNN
NNHNRTWWN
PBM
Berger et al.(2008)
Hoxb8_3780
0.634
0.737
HOXB8
M05048_2.00
Homo sapiens
NTAATKRM
KYMATTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_HT-SELEX
0.634
0.737
HOXC8
M04912_2.00
Homo sapiens
NYAATTRN
NYAATTRN
SELEX
Yin et al.(2017)
HOXC8_FL_HT-SELEX
0.634
0.737
HOXB8
M09141_2.00
Homo sapiens
BMATHAATCAA
TTGATTDATKV
Misc
Kulakovskiy et al.(2013)
HXB8_HUMAN.H11MO.0.C
0.634
0.737
Hoxb8
M09214_2.00
Mus musculus
BMATHAATCAA
TTGATTDATKV
Misc
Kulakovskiy et al.(2013)
HXB8_MOUSE.H11MO.0.C
0.634
0.737
HOXC8
M10636_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXC8_Q3
0.634
0.737
HOXB8
M05049_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_1
0.634
0.737
HOXB8
M05050_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_2
0.634
0.737
HOXC8
M04913_2.00
Homo sapiens
NYMATKRN
NYMATKRN
SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_1
0.634
0.737
HOXC8
M04914_2.00
Homo sapiens
NTWAYGRY
RYCRTWAN
SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_2
0.634
0.737
Hoxd8
M00436_2.00
Mus musculus
NNWWYNNN
NNNRWWNN
PBM
Berger et al.(2008)
Hoxd8_2644
0.634
0.719
HOXD8
M03221_2.00
Homo sapiens
VHWAATKWDN
NHWMATTWDB
SELEX
Jolma et al.(2013)
HOXD8_1
0.634
0.719
HOXD8
M05310_2.00
Homo sapiens
BTAATKRY
RYMATTAV
SELEX
Yin et al.(2017)
HOXD8_eDBD_HT-SELEX
0.634
0.719
HOXD8
M05311_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_1
0.634
0.719
HOXD8
M05312_2.00
Homo sapiens
NTWAYGRY
RYCRTWAN
SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_2
0.634
0.719
Hoxa6
M00494_2.00
Mus musculus
NWWATKRNN
NNYMATWWN
PBM
Berger et al.(2008)
Hoxa6_1040
0.630
0.719
HOXA6
M04974_2.00
Homo sapiens
NNTAATKRVN
NBYMATTANN
SELEX
Yin et al.(2017)
HOXA6_eDBD_HT-SELEX
0.630
0.719
HOXA6
M04975_2.00
Homo sapiens
NNTAATKRBN
NVYMATTANN
SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_1
0.630
0.719
HOXA6
M04976_2.00
Homo sapiens
NTAAYGRY
RYCRTTAN
SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_2
0.630
0.719
Hoxc6
M00392_2.00
Mus musculus
TTAATTAB
VTAATTAA
PBM
Berger et al.(2008)
Hoxc6_3954
0.630
0.702
abd-A
M03770_2.00
Drosophila melanogaster
NNTAATKRCN
NGYMATTANN
SELEX
Nitta et al.(2015)
abd-A_1
0.630
0.702
abd-A
M03771_2.00
Drosophila melanogaster
NNTAATKRCN
NGYMATTANN
SELEX
Nitta et al.(2015)
abd-A_2
0.630
0.702
abd-A
M06475_2.00
Drosophila melanogaster
TTAATKA
TMATTAA
B1H
Mathelier et al.(2014)
MA0206.1
0.630
0.702
abd-A
M06210_2.00
Drosophila melanogaster
WTWATKDM
KHMATWAW
B1H
Zhu et al.(2011)
Abd-A_FlyReg_FBgn0000014
0.630
0.702
abd-A
M09671_2.00
Drosophila melanogaster
HTAATKRH
DYMATTAD
Misc
Kulakovskiy et al.(2009)
abd-A
0.630
0.702
abd-A
M10778_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$ABDA_Q6
0.630
0.702
Hoxb6
M00381_2.00
Mus musculus
NNDHNNN
NNNDHNN
PBM
Berger et al.(2008)
Hoxb6_3428
0.626
0.702
Ubx
M00558_2.00
Drosophila melanogaster
NWWAYDDNN
NNHHRTWWN
PBM
Busser et al.(2012a)
Ubx
0.626
0.702
Ubx
M03804_2.00
Drosophila melanogaster
NTAATKRH
DYMATTAN
SELEX
Nitta et al.(2015)
Ubx_1
0.626
0.702
HOXB6
M04999_2.00
Homo sapiens
NTAATKRY
RYMATTAN
SELEX
Yin et al.(2017)
HOXB6_eDBD_HT-SELEX
0.626
0.702
Ubx
M06499_2.00
Drosophila melanogaster
NTTAATKR
YMATTAAN
B1H
Mathelier et al.(2014)
MA0094.2
0.626
0.702
Ubx
M06273_2.00
Drosophila melanogaster
NTTAATKR
YMATTAAN
B1H
Zhu et al.(2011)
Ubx_Cell_FBgn0003944
0.626
0.702
Ubx
M06274_2.00
Drosophila melanogaster
TAATKD
HMATTA
B1H
Zhu et al.(2011)
Ubx_FlyReg_FBgn0003944
0.626
0.702
Ubx
M06275_2.00
Drosophila melanogaster
NTTWATKR
YMATWAAN
B1H
Zhu et al.(2011)
Ubx_SOLEXA_FBgn0003944
0.626
0.702
Ubx
M09680_2.00
Drosophila melanogaster
TTAATKR
YMATTAA
Misc
Kulakovskiy et al.(2009)
Ubx
0.626
0.702
Ubx
M10788_2.00
Drosophila melanogaster
NNVNNNNTAATKRNBHNND
HNNDVNYMATTANNNNBNN
Transfac
Matys et al.(2006)
I$UBX_01
0.626
0.702
HOXB6
M05000_2.00
Homo sapiens
HTAAYGAY
RTCRTTAD
SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_1
0.626
0.702
HOXB6
M05001_2.00
Homo sapiens
NTWATKRB
VYMATWAN
SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_2
0.626
0.702
Q8I9J5_9BILA
M02214_2.00
Spadella cephaloptera
NVTAWTWABN
NVTWAWTABN
PBM
Weirauch et al.(2014)
pTH6164
0.626
0.596
Hoxa5
M00478_2.00
Mus musculus
NTAATNDNN
NNHNATTAN
PBM
Berger et al.(2008)
Hoxa5_3415
0.599
0.719
Hoxb5
M00480_2.00
Mus musculus
NWDWTNNNN
NNNNAWHWN
PBM
Berger et al.(2008)
Hoxb5_3122
0.599
0.719
HOXB5
M03125_2.00
Homo sapiens
NNKAATKRNN
NNYMATTMNN
SELEX
Jolma et al.(2013)
HOXB5_1
0.599
0.719
HOXA5
M04968_2.00
Homo sapiens
STAATKRS
SYMATTAS
SELEX
Yin et al.(2017)
HOXA5_eDBD_HT-SELEX
0.599
0.719
HOXA5
M04971_2.00
Homo sapiens
NTMATKRB
VYMATKAN
SELEX
Yin et al.(2017)
HOXA5_FL_HT-SELEX
0.599
0.719
HOXB5
M05051_2.00
Homo sapiens
NTAATKRV
BYMATTAN
SELEX
Yin et al.(2017)
HOXB5_eDBD_HT-SELEX
0.599
0.719
HOXB5
M05054_2.00
Homo sapiens
STMATKAB
VTMATKAS
SELEX
Yin et al.(2017)
HOXB5_FL_HT-SELEX
0.599
0.719
HOXA5
M10652_2.00
Homo sapiens
NGRDBKBDHNBAVTAATKRRGRDVDDDGSR
YSCHHHBHYCYYMATTABTVNDHVMVHYCN
Transfac
Matys et al.(2006)
V$HOX13_01
0.599
0.719
HOXA5
M08457_2.00
Homo sapiens
CDBWAATK
MATTWVHG
COMPILED
Mathelier et al.(2014)
MA0158.1
0.599
0.719
HOXA5
M04969_2.00
Homo sapiens
BTAATKRV
BYMATTAV
SELEX
Yin et al.(2017)
HOXA5_eDBD_Methyl-HT-SELEX_1
0.599
0.719
HOXA5
M04970_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXA5_eDBD_Methyl-HT-SELEX_2
0.599
0.719
HOXA5
M04972_2.00
Homo sapiens
NTMATKRN
NYMATKAN
SELEX
Yin et al.(2017)
HOXA5_FL_Methyl-HT-SELEX_1
0.599
0.719
HOXA5
M04973_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXA5_FL_Methyl-HT-SELEX_2
0.599
0.719
HOXB5
M05052_2.00
Homo sapiens
NTMATKRN
NYMATKAN
SELEX
Yin et al.(2017)
HOXB5_eDBD_Methyl-HT-SELEX_1
0.599
0.719
HOXB5
M05053_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXB5_eDBD_Methyl-HT-SELEX_2
0.599
0.719
HOXB5
M05055_2.00
Homo sapiens
NTMATKAB
VTMATKAN
SELEX
Yin et al.(2017)
HOXB5_FL_Methyl-HT-SELEX_1
0.599
0.719
HOXB5
M05056_2.00
Homo sapiens
HTAAYGAY
RTCRTTAD
SELEX
Yin et al.(2017)
HOXB5_FL_Methyl-HT-SELEX_2
0.599
0.719
Hoxc5
M00422_2.00
Mus musculus
NWRATND
HNATYWN
PBM
Berger et al.(2008)
Hoxc5_2630
0.599
0.702
Hoxa7
M00476_2.00
Mus musculus
NNWAYNDNN
NNHNRTWNN
PBM
Berger et al.(2008)
Hoxa7_2668
0.599
0.702
Hoxa7
M00477_2.00
Mus musculus
NYHHYNNNN
NNNNRDDRN
PBM
Berger et al.(2008)
Hoxa7_3750
0.599
0.702
Scr
M03799_2.00
Drosophila melanogaster
BTAATKRB
VYMATTAV
SELEX
Nitta et al.(2015)
Scr_1
0.599
0.702
HOXA7
M05069_2.00
Homo sapiens
NTAATKRV
BYMATTAN
SELEX
Yin et al.(2017)
HOXA7_eDBD_HT-SELEX
0.599
0.702
Scr
M06496_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Mathelier et al.(2014)
MA0203.1
0.599
0.702
Antp
M06549_2.00
Drosophila melanogaster
TTAATKA
TMATTAA
B1H
Mathelier et al.(2014)
MA0166.1
0.599
0.702
Antp
M06374_2.00
Drosophila melanogaster
YTTAATKA
TMATTAAR
B1H
Zhu et al.(2011)
Antp_Cell_FBgn0000095
0.599
0.702
Antp
M06375_2.00
Drosophila melanogaster
WTAATW
AATTAW
B1H
Zhu et al.(2011)
Antp_FlyReg_FBgn0000095
0.599
0.702
Antp
M06376_2.00
Drosophila melanogaster
NHTAATKR
YMATTADN
B1H
Zhu et al.(2011)
Antp_SOLEXA_FBgn0000095
0.599
0.702
Scr
M06266_2.00
Drosophila melanogaster
HVYTAATKA
TMATTARBD
B1H
Zhu et al.(2011)
Scr_Cell_FBgn0003339
0.599
0.702
Scr
M06267_2.00
Drosophila melanogaster
YTAATKR
YMATTAR
B1H
Zhu et al.(2011)
Scr_SOLEXA_FBgn0003339
0.599
0.702
Antp
M09682_2.00
Drosophila melanogaster
TYTTWATKA
TMATWAARA
Misc
Kulakovskiy et al.(2009)
Antp
0.599
0.702
Antp
M10789_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$ANTP_Q6_01
0.599
0.702
HOXA7
M10679_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA7_01
0.599
0.702
HOXA7
M05070_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
HOXA7_eDBD_Methyl-HT-SELEX_1
0.599
0.702
HOXA7
M05071_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXA7_eDBD_Methyl-HT-SELEX_2
0.599
0.702
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000009951
Homeodomain
186
242
RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK
Links
Other
Homeodomain
family TFs
Other
Rattus norvegicus
TFs
1646 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy