Irx3 (Rattus norvegicus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSRNOG00000011533 T215393_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FGRRES_07914
M02132_2.00
Fusarium graminearum
NNKACATGTHN

NDACATGTMNN
PBM
Weirauch et al.(2014)
pTH6329
0.606 0.423
Irx4
M00416_2.00
Mus musculus
NNNDAMAH

DTKTHNNN
PBM
Berger et al.(2008)
Irx4_2242
0.485 1.000
Irx2
M00386_2.00
Mus musculus
NNDACAHNN

NNDTGTHNN
PBM
Berger et al.(2008)
Irx2_0900
0.454 1.000
Irx3
M00453_2.00
Mus musculus
NNDACAHNNN

NNNDTGTHNN
PBM
Berger et al.(2008)
Irx3_0920
0.454 1.000
Irx3
M00454_2.00
Mus musculus
NNDACWHN

NDWGTHNN
PBM
Berger et al.(2008)
Irx3_2226
0.454 1.000
Irx5
M00455_2.00
Mus musculus
NNNDACAHN

NDTGTHNNN
PBM
Berger et al.(2008)
Irx5_2385
0.454 1.000
Irx6
M00456_2.00
Mus musculus
NNDAHWN

NWDTHNN
PBM
Berger et al.(2008)
Irx6_2623
0.454 1.000
IRX2
M03212_2.00
Homo sapiens
NDACAYRACAHN

NDTGTYRTGTHN
SELEX
Jolma et al.(2013)
IRX2_1
0.454 1.000
IRX5
M03222_2.00
Homo sapiens
NDACAYRACAHN

NDTGTYRTGTHN
SELEX
Jolma et al.(2013)
IRX5_1
0.454 1.000
Irx3
M03266_2.00
Mus musculus
WWTKTCATGTWR

YWACATGAMAWW
SELEX
Jolma et al.(2013)
Irx3_1
0.454 1.000
IRX1
M05283_2.00
Homo sapiens
DDCRHNNNNNNNNDYGHH

DDCRHNNNNNNNNDYGHH
SELEX
Yin et al.(2017)
IRX1_eDBD_HT-SELEX
0.454 1.000
IRX3
M05319_2.00
Homo sapiens
DACAHGNWWWWNCDTGTH

DACAHGNWWWWNCDTGTH
SELEX
Yin et al.(2017)
IRX3_eDBD_HT-SELEX
0.454 1.000
IRX5
M05315_2.00
Homo sapiens
NBDTGTHNDACAYVN

NBRTGTHNDACAHVN
SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX
0.454 1.000
mirr
M06514_2.00
Drosophila melanogaster
WWACA

TGTWW
B1H
Mathelier et al.(2014)
MA0233.1
0.454 1.000
ara
M06518_2.00
Drosophila melanogaster
WWACA

TGTWW
B1H
Mathelier et al.(2014)
MA0210.1
0.454 1.000
caup
M06519_2.00
Drosophila melanogaster
WAACA

TGTTW
B1H
Mathelier et al.(2014)
MA0217.1
0.454 1.000
ara
M06313_2.00
Drosophila melanogaster
TGTWWWNN

NNWWWACA
B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904
0.454 1.000
ara
M06314_2.00
Drosophila melanogaster
DWWACA

TGTWWH
B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904
0.454 1.000
caup
M06315_2.00
Drosophila melanogaster
HWDWAACA

TGTTWHWD
B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919
0.454 1.000
caup
M06316_2.00
Drosophila melanogaster
NDDACA

TGTHHN
B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919
0.454 1.000
mirr
M06305_2.00
Drosophila melanogaster
NDNWWACA

TGTWWNHN
B1H
Zhu et al.(2011)
Mirr_Cell_FBgn0014343
0.454 1.000
mirr
M06306_2.00
Drosophila melanogaster
DDWACA

TGTWHH
B1H
Zhu et al.(2011)
Mirr_SOLEXA_FBgn0014343
0.454 1.000
IRX1
M05284_2.00
Homo sapiens
NNCRHNNNNNNNNDYVHN

NDBRHNNNNNNNNDYGNN
SELEX
Yin et al.(2017)
IRX1_eDBD_Methyl-HT-SELEX
0.454 1.000
IRX3
M05320_2.00
Homo sapiens
DACRYRHNWWNDYKCGTW

WACGMRHNWWNDYRYGTH
SELEX
Yin et al.(2017)
IRX3_eDBD_Methyl-HT-SELEX
0.454 1.000
IRX5
M05316_2.00
Homo sapiens
WYRYGHHNHAYRYRY

RYRYRTDNDDCRYRW
SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX
0.454 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000015583 Homeodomain 1 26

Links

Other Homeodomain family TFs
Other Rattus norvegicus TFs

555 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OLIG3 Homo sapiens ENSG00000177468 D 0.000
OLIG2 Homo sapiens ENSG00000205927 D 0.000
Olig3 Mus musculus ENSMUSG00000045591 D 0.000
Olig2 Mus musculus ENSMUSG00000039830 D 0.000
ENSPSIG00000001778 Pelodiscus sinensis ENSPSIG00000001778 I 0.000
ENSPSIG00000001988 Pelodiscus sinensis ENSPSIG00000001988 I 0.000
OLIG2 Pan troglodytes ENSPTRG00000013863 I 0.000
OLIG3 Pan troglodytes ENSPTRG00000018643 I 0.000
Olig3 Rattus norvegicus ENSRNOG00000012057 I 0.000
Olig2 Rattus norvegicus ENSRNOG00000028658 I 0.000
ENSSHAG00000007183 Sarcophilus harrisii ENSSHAG00000007183 I 0.000
OLIG3 Sus scrofa ENSSSCG00000004155 I 0.000
ENSSTOG00000020214 Ictidomys tridecemlineatus ENSSTOG00000020214 I 0.000
ENSSTOG00000020899 Ictidomys tridecemlineatus ENSSTOG00000020899 I 0.000
ENSPPYG00000017041 Pongo abelii ENSPPYG00000017041 I 0.000
ENSPPYG00000011369 Pongo abelii ENSPPYG00000011369 I 0.000
ENSPFOG00000019968 Poecilia formosa ENSPFOG00000019968 I 0.000
OLIG2 Otolemur garnettii ENSOGAG00000026818 I 0.000
ENSONIG00000017079 Oreochromis niloticus ENSONIG00000017079 I 0.000
ENSONIG00000020727 Oreochromis niloticus ENSONIG00000020727 I 0.000
OLIG3 Ochotona princeps ENSOPRG00000003267 I 0.000
olig2 Oryzias latipes ENSORLG00000010211 I 0.000
ENSPANG00000006465 Papio anubis ENSPANG00000006465 I 0.000
ENSPANG00000007664 Papio anubis ENSPANG00000007664 I 0.000
OLIG3 Procavia capensis ENSPCAG00000002488 I 0.000
OLIG2 Procavia capensis ENSPCAG00000005657 I 0.000
ENSPFOG00000004604 Poecilia formosa ENSPFOG00000004604 I 0.000
ENSPFOG00000015805 Poecilia formosa ENSPFOG00000015805 I 0.000
OLIG3 Taeniopygia guttata ENSTGUG00000010892 I 0.000
olig2 Tetraodon nigroviridis ENSTNIG00000000234 I 0.000
olig2 Tetraodon nigroviridis ENSTNIG00000003641 I 0.000
Gfo_R003786 Geospiza fortis Gfo_R003786 I 0.000
Myotis_brandtii_OLIG3_10035715 Myotis brandtii Myotis_brandtii_OLIG3_10035715 I 0.000
Ogr17936 Ophisaurus gracilis Ogr17936 I 0.000
Pvit_10685 Pogona vitticeps Pvit_10685 I 0.000
Pvit_17282 Pogona vitticeps Pvit_17282 I 0.000
Ocbimv22001042m.g Octopus bimaculoides Ocbimv22001042m.g I 0.000
Sakowv30018772m.g Saccoglossus kowalevskii Sakowv30018772m.g I 0.000
olig3 Xenopus tropicalis XB-GENE-919789 I 0.000
XP_002938491 Xenopus tropicalis XP_002938491 I 0.000
BGLB010755 Biomphalaria glabrata BGLB010755 I 0.000
D915_09810 Fasciola hepatica D915_09810 I 0.000
ENSP00000356708 Macaca fascicularis ENSP00000356708 I 0.000
ENSP00000356708-D1 Bos grunniens ENSP00000356708-D1 I 0.000
ENSBTAP00000021340-D1 Bos grunniens ENSBTAP00000021340-D1 I 0.000
OLIG3 Tetraodon nigroviridis ENSTNIG00000017004 I 0.000
olig2 Takifugu rubripes ENSTRUG00000014944 I 0.000
ENSXMAG00000001116 Xiphophorus maculatus ENSXMAG00000001116 I 0.000
ENSXMAG00000018245 Xiphophorus maculatus ENSXMAG00000018245 I 0.000
LotgiG70673 Lottia gigantea LotgiG70673 I 0.000
Aan_R009789 Calypte anna Aan_R009789 I 0.000
Afo_R014889 Aptenodytes forsteri Afo_R014889 I 0.000
Alligator_sinensis_CCG012594.1 Alligator sinensis Alligator_sinensis_CCG012594.1 I 0.000
Brh_R007937 Buceros rhinoceros Brh_R007937 I 0.000
Cmyd_10005462 Chelonia mydas Cmyd_10005462 I 0.000
Cmyd_10011949 Chelonia mydas Cmyd_10011949 I 0.000
ECPE_0001595001 Echinostoma caproni ECPE_0001595001 I 0.000
OLIG3 Otolemur garnettii ENSOGAG00000011977 I 0.000
CapteG65387 Capitella teleta CapteG65387 I 0.000
OLIG2 Cavia porcellus ENSCPOG00000011590 I 0.000
ENSCSAG00000000185 Chlorocebus sabaeus ENSCSAG00000000185 I 0.000
ENSCSAG00000018687 Chlorocebus sabaeus ENSCSAG00000018687 I 0.000
olig2 Danio rerio ENSDARG00000040946 I 0.000
OLIG3 Dasypus novemcinctus ENSDNOG00000042405 I 0.000
OLIG2 Dasypus novemcinctus ENSDNOG00000047420 I 0.000
ENSDORG00000006743 Dipodomys ordii ENSDORG00000006743 I 0.000
Olig3 Dipodomys ordii ENSDORG00000013033 I 0.000
OLIG3 Echinops telfairi ENSETEG00000004562 I 0.000
ENSFALG00000012862 Ficedula albicollis ENSFALG00000012862 I 0.000
OLIG3 Felis catus ENSFCAG00000030246 I 0.000
OLIG3 Cavia porcellus ENSCPOG00000007516 I 0.000
OLIG2 Callithrix jacchus ENSCJAG00000009439 I 0.000
CGI_10019998 Crassostrea gigas CGI_10019998 I 0.000
CGI_10023146 Crassostrea gigas CGI_10023146 I 0.000
ENSAMEG00000015013 Ailuropoda melanoleuca ENSAMEG00000015013 I 0.000
ENSAMEG00000019633 Ailuropoda melanoleuca ENSAMEG00000019633 I 0.000
ENSAMXG00000026066 Astyanax mexicanus ENSAMXG00000026066 I 0.000
ENSAMXG00000026284 Astyanax mexicanus ENSAMXG00000026284 I 0.000
ENSAPLG00000002295 Anas platyrhynchos ENSAPLG00000002295 I 0.000
OLIG3 Bos taurus ENSBTAG00000008749 I 0.000
OLIG3 Canis familiaris ENSCAFG00000000265 I 0.000
OLIG2 Canis familiaris ENSCAFG00000028529 I 0.000
OLIG3 Choloepus hoffmanni ENSCHOG00000005165 I 0.000
CapteG41307 Capitella teleta CapteG41307 I 0.000
olig2 Gasterosteus aculeatus ENSGACG00000002152 I 0.000
OLIG3 Gasterosteus aculeatus ENSGACG00000010412 I 0.000
ENSMICG00000004313 Microcebus murinus ENSMICG00000004313 I 0.000
OLIG3 Myotis lucifugus ENSMLUG00000026705 I 0.000
OLIG2 Macaca mulatta ENSMMUG00000017652 I 0.000
ENSMMUG00000029441 Macaca mulatta ENSMMUG00000029441 I 0.000
OLIG3 Monodelphis domestica ENSMODG00000017418 I 0.000
OLIG2 Monodelphis domestica ENSMODG00000025338 I 0.000
ENSMPUG00000001227 Mustela putorius furo ENSMPUG00000001227 I 0.000
ENSMPUG00000018873 Mustela putorius furo ENSMPUG00000018873 I 0.000
ENSNLEG00000019305 Nomascus leucogenys ENSNLEG00000019305 I 0.000
OLIG3 Ornithorhynchus anatinus ENSOANG00000014796 I 0.000
ENSOARG00000002572 Ovis aries ENSOARG00000002572 I 0.000
ENSMEUG00000002914 Macropus eugenii ENSMEUG00000002914 I 0.000
ENSLOCG00000017506 Lepisosteus oculatus ENSLOCG00000017506 I 0.000
OLIG3 Gallus gallus ENSGALG00000013862 I 0.000
ENSGALG00000027381 Gallus gallus ENSGALG00000027381 I 0.000
OLIG3 Gorilla gorilla ENSGGOG00000001516 I 0.000
OLIG2 Gorilla gorilla ENSGGOG00000008780 I 0.000
ENSGMOG00000018006 Gadus morhua ENSGMOG00000018006 I 0.000
ENSGMOG00000018584 Gadus morhua ENSGMOG00000018584 I 0.000
ENSLACG00000005047 Latimeria chalumnae ENSLACG00000005047 I 0.000
ENSLACG00000005481 Latimeria chalumnae ENSLACG00000005481 I 0.000
OLIG3 Loxodonta africana ENSLAFG00000005655 I 0.000
OLIG2 Loxodonta africana ENSLAFG00000028347 I 0.000
ENSLOCG00000017350 Lepisosteus oculatus ENSLOCG00000017350 I 0.000
OLIG3 Oryctolagus cuniculus ENSOCUG00000017289 I 0.000