CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pbx3
(
Rattus norvegicus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSRNOG00000022162
T215444_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in animal organ development; neuron development; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including adult locomotory behavior; dorsal spinal cord development; and regulation of respiratory gaseous exchange by nervous system process. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Orthologous to human PBX3 (PBX homeobox 3). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Pbx3
M09205_2.00
Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV
Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A
0.867
1.000
Pbx1
M00513_2.00
Mus musculus
NNDKANNNN
NNNNTMHNN
PBM
Berger et al.(2008)
Pbx1_3203
0.865
0.965
PBX1
M05362_2.00
Homo sapiens
NTGATKGAYR
YRTCMATCAN
SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX
0.865
0.965
PBX1
M05364_2.00
Homo sapiens
DTGMTKGRYN
NRYCMAKCAH
SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX
0.865
0.965
PBX1
M02685_2.00
Homo sapiens
WWTGATTGATND
HNATCAATCAWW
SELEX
Mathelier et al.(2014)
MA0070.1
0.865
0.965
PBX2
M08134_2.00
Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN
ChIP-seq
Mathelier et al.(2014)
MA1113.1
0.865
0.965
PBX1
M09164_2.00
Homo sapiens
DGABTGRCRG
CYGYCAVTCH
Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A
0.865
0.965
PBX2
M09165_2.00
Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C
0.865
0.965
Pbx2
M09199_2.00
Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C
0.865
0.965
PBX1
M09561_2.00
Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA
Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007
0.865
0.965
PBX1
M10748_2.00
Homo sapiens
WTKATTRDT
AHYAATMAW
Transfac
Matys et al.(2006)
V$PBX1_01
0.865
0.965
PBX1
M10749_2.00
Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH
Transfac
Matys et al.(2006)
V$PBX1_02
0.865
0.965
PBX1
M10750_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_03
0.865
0.965
PBX1
M10751_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_05
0.865
0.965
PBX1
M10752_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_10
0.865
0.965
PBX1
M10753_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_Q3
0.865
0.965
PBX1
M05363_2.00
Homo sapiens
DTGAKKGAYG
CRTCMMTCAH
SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX
0.865
0.965
PBX1
M05365_2.00
Homo sapiens
MRTCAATCMH
DKGATTGAYK
SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX
0.865
0.965
pbx4
M02110_2.00
Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA
PBM
Weirauch et al.(2014)
pTH6425
0.865
0.947
exd
M06487_2.00
Drosophila melanogaster
YRTCAAAN
NTTTGAYR
B1H
Mathelier et al.(2014)
MA0222.1
0.820
0.947
exd
M06243_2.00
Drosophila melanogaster
YRTCAAAN
NTTTGAYR
B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611
0.820
0.947
exd
M06244_2.00
Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN
B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611
0.820
0.947
exd
M06245_2.00
Drosophila melanogaster
NDTGAYRW
WYRTCAHN
B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611
0.820
0.947
exd
M06246_2.00
Drosophila melanogaster
NNDTGAYR
YRTCAHNN
B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611
0.820
0.947
PBX4
M00277_2.00
Homo sapiens
NNDDWHDNNN
NNNHDWHHNN
PBM
Barrera et al.(2016)
PBX4_REF
0.813
0.877
PBX4
M10649_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX4_01
0.813
0.877
CBG10835
M01243_2.00
Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN
PBM
Lambert et al.(2019)
pTH11444
0.691
0.579
PBX4
M00276_2.00
Homo sapiens
NYTAATTADNN
NNHTAATTARN
PBM
Barrera et al.(2016)
PBX4_R215Q
0.675
0.860
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000029846
Homeodomain
236
295
RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYKK
ENSRNOP00000075035
Homeodomain
212
271
RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYKK
Links
Other
Homeodomain
family TFs
Other
Rattus norvegicus
TFs
437 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy