ENSSSCG00000024056 (Sus scrofa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSSSCG00000024056 T215916_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
VSX1
M03087_2.00
Homo sapiens
YTAATTAN

NTAATTAR
SELEX
Jolma et al.(2013)
VSX1_1
0.602 0.457
VSX1
M03088_2.00
Homo sapiens
NNYAATTRRBN

NVYYAATTRNN
SELEX
Jolma et al.(2013)
VSX1_2
0.602 0.457
VSX1
M04941_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX
0.602 0.457
VSX1
M04944_2.00
Homo sapiens
NTAATTRS

SYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX
0.602 0.457
VSX1
M05869_2.00
Homo sapiens
DGCTAATTAN

NTAATTAGCH
SMiLE-seq
Isakova et al.(2017)
VSX1
0.602 0.457
VSX1
M04942_2.00
Homo sapiens
NTAAYGMN

NKCRTTAN
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1
0.602 0.457
VSX1
M04943_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2
0.602 0.457
VSX1
M04945_2.00
Homo sapiens
NTAATTRG

CYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1
0.602 0.457
VSX1
M04946_2.00
Homo sapiens
NTAAYGAN

NTCRTTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2
0.602 0.457
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000020728 Homeodomain 116 161

Links

Other Homeodomain family TFs
Other Sus scrofa TFs

158 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSOCUG00000029553 Oryctolagus cuniculus ENSOCUG00000029553 I 0.761
scaffold74-EXSNAP2012.8 Pristionchus exspectatus scaffold74-EXSNAP2012.8 I 0.721
Hba_10596 Heterorhabditis bacteriophora Hba_10596 I 0.721
SVUK_0001921301 Strongylus vulgaris SVUK_0001921301 I 0.721
BXY_1244000 Bursaphelenchus xylophilus BXY_1244000 N 0.708
OESDEN_23981 Oesophagostomum dentatum OESDEN_23981 I 0.703
M407DRAFT_218356 Tulasnella calospora M407DRAFT_218356 N 0.683
SVUK_0001874801 Strongylus vulgaris SVUK_0001874801 I 0.674
ANCCAN_27793 Ancylostoma caninum ANCCAN_27793 N 0.663
ANCDUO_08440 Ancylostoma duodenale ANCDUO_08440 N 0.663
GPUH_0002288101 Gongylonema pulchrum GPUH_0002288101 N 0.661
L893_g32186 Steinernema glaseri L893_g32186 N 0.648
ENSMPUG00000001479 Mustela putorius furo ENSMPUG00000001479 N 0.647
AMAG_05753 Allomyces macrogynus AMAG_05753 N 0.628
L898_g16919 Steinernema monticolum L898_g16919 N 0.622
CRX Felis catus ENSFCAG00000028028 I 0.620
M408DRAFT_217919 Serendipita vermifera M408DRAFT_217919 N 0.616
ENSMGAG00000011132 Meleagris gallopavo ENSMGAG00000011132 I 0.615
AARA002478 Anopheles arabiensis AARA002478 I 0.614
AMEC010863 Anopheles melas AMEC010863 I 0.614
AMIN007578 Anopheles minimus AMIN007578 I 0.614
AQUA007758 Anopheles quadriannulatus AQUA007758 I 0.614
D918_04147 Trichuris suis D918_04147 I 0.614
AFUN009611 Anopheles funestus AFUN009611 I 0.614
HHAL007594-PA Halyomorpha halys HHAL007594-PA I 0.614
AEPI006030 Anopheles epiroticus AEPI006030 I 0.614
AALB004176 Anopheles albimanus AALB004176 I 0.614
BGIBMGA000211 Bombyx mori BGIBMGA000211 I 0.612
tetur18g02470 Tetranychus urticae tetur18g02470 I 0.612
LCUP015447 Lucilia cuprina LCUP015447 I 0.612
TRE_0001440501 Trichobilharzia regenti TRE_0001440501 I 0.612
LDEC010779 Leptinotarsa decemlineata LDEC010779 I 0.612
SCUD_0001284101 Schistosoma curassoni SCUD_0001284101 I 0.612
SMRZ_0000822101 Schistosoma margrebowiei SMRZ_0000822101 I 0.612
AFAF015671 Anopheles farauti AFAF015671 I 0.611
ASIM_0000280701 Anisakis simplex ASIM_0000280701 I 0.611
ANCCAN_14588 Ancylostoma caninum ANCCAN_14588 I 0.611
AATE010168 Anopheles atroparvus AATE010168 I 0.611
TC013331 Tribolium castaneum TC013331 I 0.611
TCNE_0000050301 Toxocara canis TCNE_0000050301 I 0.611
ACUA020281 Anopheles culicifacies ACUA020281 I 0.611
ECANG7_02777 Echinococcus canadensis ECANG7_02777 I 0.610
Ogr07504 Ophisaurus gracilis Ogr07504 I 0.610
fgenesh2_pg.scaffold_1255000001 Branchiostoma floridae fgenesh2_pg.scaffold_1255000001 I 0.609
Sakowv30005917m.g Saccoglossus kowalevskii Sakowv30005917m.g I 0.609
e_gw.40.358.1 Branchiostoma floridae e_gw.40.358.1 I 0.609
HelroG92991 Helobdella robusta HelroG92991 I 0.609
Brh_R002779 Buceros rhinoceros Brh_R002779 I 0.609
Ocbimv22007999m.g Octopus bimaculoides Ocbimv22007999m.g I 0.609
MCOS_0000103301 Mesocestoides corti MCOS_0000103301 I 0.609
ENSOANG00000031800 Ornithorhynchus anatinus ENSOANG00000031800 I 0.609
ENSCAFG00000030625 Canis familiaris ENSCAFG00000030625 N 0.609
ENSBTAG00000027563 Bos taurus ENSBTAG00000027563 I 0.609
AMIN008967 Anopheles minimus AMIN008967 I 0.607
AALB004181 Anopheles albimanus AALB004181 I 0.607
ACUA010092 Anopheles culicifacies ACUA010092 I 0.607
AFAF001542 Anopheles farauti AFAF001542 I 0.607
AEPI002463 Anopheles epiroticus AEPI002463 I 0.607
AFUN009618 Anopheles funestus AFUN009618 I 0.607
AFUN010033 Anopheles funestus AFUN010033 I 0.607
ASTEI06440 Anopheles stephensi ASTEI06440 I 0.607
ADIR003867 Anopheles dirus ADIR003867 I 0.607
ASTEI07265 Anopheles stephensi ASTEI07265 I 0.607
AATE016624 Anopheles atroparvus AATE016624 I 0.607
ACOM035107 Anopheles coluzzii ACOM035107 I 0.607
ANCCAN_08107 Ancylostoma caninum ANCCAN_08107 I 0.607
ACUA011992 Anopheles culicifacies ACUA011992 I 0.607
AARA003087 Anopheles arabiensis AARA003087 I 0.607
Cflo_03633--XP_001119966.1_APIME Camponotus floridanus Cflo_03633--XP_001119966.1_APIME I 0.607
ENSMPUG00000012395 Mustela putorius furo ENSMPUG00000012395 I 0.607
SSLN_0001410001 Schistocephalus solidus SSLN_0001410001 I 0.607
SROB_0000535701 Schistosoma rodhaini SROB_0000535701 I 0.607
SPER_0002253701 Spirometra erinaceieuropaei SPER_0002253701 I 0.607
GB51950 Apis mellifera GB51950 I 0.607
RAX Equus caballus ENSECAG00000020004 I 0.607
T265_13165 Opisthorchis viverrini T265_13165 I 0.607
ACEP27607 Atta cephalotes ACEP27607 I 0.607
AAEL015234 Aedes aegypti AAEL015234 I 0.607
TTRE_0000684201 Trichuris trichiura TTRE_0000684201 I 0.607
CapteG117834 Capitella teleta CapteG117834 I 0.607
CJA32702 Caenorhabditis japonica CJA32702 I 0.607
ISCW014108 Ixodes scapularis ISCW014108 I 0.607
SINV20595 Solenopsis invicta SINV20595 I 0.607
D918_05239 Trichuris suis D918_05239 I 0.607
Gfo_R004647 Geospiza fortis Gfo_R004647 I 0.607
ANCDUO_20951 Ancylostoma duodenale ANCDUO_20951 I 0.607
Ocbimv22027060m.g Octopus bimaculoides Ocbimv22027060m.g I 0.607
CLEC000964 Cimex lectularius CLEC000964 I 0.607
Gfo_R000073 Geospiza fortis Gfo_R000073 I 0.607
ENSBTAP00000030951-D1 Bos grunniens ENSBTAP00000030951-D1 I 0.607
SPU_021491 Strongylocentrotus purpuratus SPU_021491 I 0.607
YQE_03176 Dendroctonus ponderosae YQE_03176 I 0.607
HPLM_0001688501 Haemonchus placei HPLM_0001688501 I 0.607
LCUP005858 Lucilia cuprina LCUP005858 I 0.607
Cflo_10607--XP_001119852.1_APIME Camponotus floridanus Cflo_10607--XP_001119852.1_APIME I 0.607
MCOS_0000376801 Mesocestoides corti MCOS_0000376801 I 0.606
ACOM035376 Anopheles coluzzii ACOM035376 I 0.606
AMEC005174 Anopheles melas AMEC005174 I 0.606
Alligator_sinensis_CCG000828.1 Alligator sinensis Alligator_sinensis_CCG000828.1 I 0.606
Ogr11012 Ophisaurus gracilis Ogr11012 I 0.606
AMEM001610 Anopheles merus AMEM001610 I 0.606
AMIN002500 Anopheles minimus AMIN002500 I 0.605
maker-nMf.1.1.scaf10537-augustus-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf10537-augustus-gene-0.4 I 0.605
DME_0000670301 Dracunculus medinensis DME_0000670301 I 0.605
Smp_161270 Schistosoma mansoni Smp_161270 I 0.605
EEL_0000229301 Elaeophora elaphi EEL_0000229301 I 0.605
EVEC_0000184101 Enterobius vermicularis EVEC_0000184101 I 0.605
SINV25034 Solenopsis invicta SINV25034 I 0.605
PXEA_0002999701 Protopolystoma xenopodis PXEA_0002999701 I 0.605
SMRZ_0000538501 Schistosoma margrebowiei SMRZ_0000538501 I 0.605
SCUD_0000925401 Schistosoma curassoni SCUD_0000925401 I 0.605
SMTD_0000912801 Schistosoma mattheei SMTD_0000912801 I 0.605
SPER_0001733801 Spirometra erinaceieuropaei SPER_0001733801 I 0.605
D915_09868 Fasciola hepatica D915_09868 I 0.605
OFLC_0001281801 Onchocerca flexuosa OFLC_0001281801 I 0.605
NBR_0001532201 Nippostrongylus brasiliensis NBR_0001532201 I 0.605
DICVIV_11092 Dictyocaulus viviparus DICVIV_11092 I 0.605
ACUA004412 Anopheles culicifacies ACUA004412 I 0.605
ANCCAN_20314 Ancylostoma caninum ANCCAN_20314 I 0.605
LLOJ008518 Lutzomyia longipalpis LLOJ008518 I 0.605
ACYPI081976 Acyrthosiphon pisum ACYPI081976 I 0.605
AMEC014658 Anopheles melas AMEC014658 I 0.605
ADIR002748 Anopheles dirus ADIR002748 I 0.605
LCUP003716 Lucilia cuprina LCUP003716 I 0.605
AARA004375 Anopheles arabiensis AARA004375 I 0.605
ACOC_0001076001 Angiostrongylus costaricensis ACOC_0001076001 I 0.602
BGIBMGA008566 Bombyx mori BGIBMGA008566 I 0.602
VSX1 Homo sapiens ENSG00000100987 D 0.602
VSX1 Callithrix jacchus ENSCJAG00000011818 I 0.602
ACOC_0000069301 Angiostrongylus costaricensis ACOC_0000069301 I 0.601
ACAC_0001012701 Angiostrongylus cantonensis ACAC_0001012701 I 0.601
ENSTNIG00000005617 Tetraodon nigroviridis ENSTNIG00000005617 I 0.601
Brh_R001721 Buceros rhinoceros Brh_R001721 I 0.601
Ocbimv22008407m.g Octopus bimaculoides Ocbimv22008407m.g I 0.601
SVUK_0001995201 Strongylus vulgaris SVUK_0001995201 I 0.601
Tal_R008647 Tyto alba Tal_R008647 I 0.601
ENSTRUG00000002215 Takifugu rubripes ENSTRUG00000002215 I 0.601
Phox2b Rattus norvegicus ENSRNOG00000051929 I 0.599
ENSOCUG00000001021 Oryctolagus cuniculus ENSOCUG00000001021 I 0.599
ENSFALG00000002899 Ficedula albicollis ENSFALG00000002899 I 0.599
Phox2b Mus musculus ENSMUSG00000012520 D 0.599
BGIBMGA001200 Bombyx mori BGIBMGA001200 I 0.599
ENSAPLG00000007835 Anas platyrhynchos ENSAPLG00000007835 I 0.599
Aan_R004115 Calypte anna Aan_R004115 I 0.599
Gfo_R010382 Geospiza fortis Gfo_R010382 I 0.599
Brh_R010491 Buceros rhinoceros Brh_R010491 I 0.599
Tal_R009524 Tyto alba Tal_R009524 I 0.599
HHAL008731-PA Halyomorpha halys HHAL008731-PA I 0.599
LLOJ001498 Lutzomyia longipalpis LLOJ001498 I 0.599
PPAI002754 Phlebotomus papatasi PPAI002754 I 0.599
Afo_R009549 Aptenodytes forsteri Afo_R009549 I 0.599
tetur02g06020 Tetranychus urticae tetur02g06020 I 0.599
PXEA_0001980401 Protopolystoma xenopodis PXEA_0001980401 I 0.599
SBAD_0000889101 Soboliphyme baturini SBAD_0000889101 I 0.599
PEQ_0000620601 Parascaris equorum PEQ_0000620601 I 0.599
nRc.2.0.1.g13365 Romanomermis culicivorax nRc.2.0.1.g13365 I 0.599
SPU_013464 Strongylocentrotus purpuratus SPU_013464 I 0.599
scaffold110-EXSNAP2012.2 Pristionchus exspectatus scaffold110-EXSNAP2012.2 I 0.599