CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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pknox1.2
(
Tetraodon nigroviridis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSTNIG00000004244
T216422_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Pknox1
M00399_2.00
Mus musculus
HGACRNNN
NNNYGTCD
PBM
Berger et al.(2008)
Pknox1_2364
0.802
0.945
PKNOX1
M03178_2.00
Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA
SELEX
Jolma et al.(2013)
PKNOX1_1
0.802
0.945
PKNOX1
M05206_2.00
Homo sapiens
TGACASSTGTCA
TGACASSTGTCA
SELEX
Yin et al.(2017)
PKNOX1_eDBD_HT-SELEX
0.802
0.945
PKNOX1
M05208_2.00
Homo sapiens
TGACAGCTGTCA
TGACAGCTGTCA
SELEX
Yin et al.(2017)
PKNOX1_FL_HT-SELEX
0.802
0.945
PKNOX1
M09150_2.00
Homo sapiens
TGABTGRCRGV
BCYGYCAVTCA
Misc
Kulakovskiy et al.(2013)
PKNX1_HUMAN.H11MO.0.B
0.802
0.945
Pknox1
M09175_2.00
Mus musculus
TGABTGRCRGV
BCYGYCAVTCA
Misc
Kulakovskiy et al.(2013)
PKNX1_MOUSE.H11MO.0.A
0.802
0.945
PKNOX1
M10712_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PREP1_Q3
0.802
0.945
PKNOX1
M05207_2.00
Homo sapiens
YGWCASSTGWCR
YGWCASSTGWCR
SELEX
Yin et al.(2017)
PKNOX1_eDBD_Methyl-HT-SELEX
0.802
0.945
PKNOX1
M05209_2.00
Homo sapiens
TGACABVTGTCA
TGACABVTGTCA
SELEX
Yin et al.(2017)
PKNOX1_FL_Methyl-HT-SELEX
0.802
0.945
Pknox2
M00468_2.00
Mus musculus
NNNGACRNNN
NNNYGTCNNN
PBM
Berger et al.(2008)
Pknox2_3077
0.802
0.909
PKNOX2
M03195_2.00
Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA
SELEX
Jolma et al.(2013)
PKNOX2_1
0.802
0.909
Pknox2
M03270_2.00
Mus musculus
TGACAGSTGTCA
TGACASCTGTCA
SELEX
Jolma et al.(2013)
Pknox2_1
0.802
0.909
PKNOX2
M05246_2.00
Homo sapiens
TGACABVTGTCA
TGACABVTGTCA
SELEX
Yin et al.(2017)
PKNOX2_eDBD_HT-SELEX
0.802
0.909
PKNOX2
M05247_2.00
Homo sapiens
TGACASSTGTCA
TGACASSTGTCA
SELEX
Yin et al.(2017)
PKNOX2_eDBD_Methyl-HT-SELEX
0.802
0.909
Meis1
M00407_2.00
Mus musculus
NTGACADNN
NNHTGTCAN
PBM
Berger et al.(2008)
Meis1_2335
0.686
0.691
Meis2
M00437_2.00
Mus musculus
NTGACANNN
NNNTGTCAN
PBM
Berger et al.(2008)
Mrg1_2246
0.686
0.691
Meis3
M00488_2.00
Mus musculus
NTGACANNN
NNNTGTCAN
PBM
Berger et al.(2008)
Mrg2_2302
0.686
0.691
MEIS1
M03165_2.00
Homo sapiens
NTGACAN
NTGTCAN
SELEX
Jolma et al.(2013)
MEIS1_1
0.686
0.691
MEIS2
M03147_2.00
Homo sapiens
WTGACAGSTGTCAM
KTGACASCTGTCAW
SELEX
Jolma et al.(2013)
MEIS2_1
0.686
0.691
MEIS2
M03148_2.00
Homo sapiens
DTGACAGS
SCTGTCAH
SELEX
Jolma et al.(2013)
MEIS2_2
0.686
0.691
Meis2
M03261_2.00
Mus musculus
NTGACAN
NTGTCAN
SELEX
Jolma et al.(2013)
Meis2_1
0.686
0.691
Meis2
M03262_2.00
Mus musculus
TGACAGSTGTCA
TGACASCTGTCA
SELEX
Jolma et al.(2013)
Meis2_2
0.686
0.691
Meis3
M03279_2.00
Mus musculus
NTGACAN
NTGTCAN
SELEX
Jolma et al.(2013)
Meis3_1
0.686
0.691
Meis3
M03280_2.00
Mus musculus
TGACAGSTGTCA
TGACASCTGTCA
SELEX
Jolma et al.(2013)
Meis3_2
0.686
0.691
MEIS2
M02740_2.00
Homo sapiens
TGACASSTGTC
GACASSTGTCA
SELEX
Jolma et al.(2010)
MEIS2_dimer
0.686
0.691
MEIS2
M02741_2.00
Homo sapiens
GGACAKNT
ANMTGTCC
SELEX
Jolma et al.(2010)
MEIS2_monomer
0.686
0.691
MEIS2
M05138_2.00
Homo sapiens
TGACASSTGTCA
TGACASSTGTCA
SELEX
Yin et al.(2017)
MEIS2_eDBD_HT-SELEX
0.686
0.691
MEIS2
M05140_2.00
Homo sapiens
TGACASSTGTCA
TGACASSTGTCA
SELEX
Yin et al.(2017)
MEIS2_FL_HT-SELEX
0.686
0.691
hth
M06490_2.00
Drosophila melanogaster
TGACAK
MTGTCA
B1H
Mathelier et al.(2014)
MA0227.1
0.686
0.691
hth
M06252_2.00
Drosophila melanogaster
TGTCA
TGACA
B1H
Zhu et al.(2011)
Hth_Cell_FBgn0001235
0.686
0.691
hth
M06253_2.00
Drosophila melanogaster
NNTGACAD
HTGTCANN
B1H
Zhu et al.(2011)
hth_SOLEXA_2_FBgn0001235
0.686
0.691
hth
M06254_2.00
Drosophila melanogaster
NTGACA
TGTCAN
B1H
Zhu et al.(2011)
Hth_SOLEXA_FBgn0001235
0.686
0.691
MEIS1
M09148_2.00
Homo sapiens
NTGATTDATDDB
VHHATHAATCAN
Misc
Kulakovskiy et al.(2013)
MEIS1_HUMAN.H11MO.0.A
0.686
0.691
MEIS2
M09143_2.00
Homo sapiens
HTGACAGBTKTBM
KVAMAVCTGTCAD
Misc
Kulakovskiy et al.(2013)
MEIS2_HUMAN.H11MO.0.B
0.686
0.691
Meis1
M09178_2.00
Mus musculus
NTGATTDATDDB
VHHATHAATCAN
Misc
Kulakovskiy et al.(2013)
MEIS1_MOUSE.H11MO.0.A
0.686
0.691
Meis2
M09189_2.00
Mus musculus
HTGACAGBTKTBM
KVAMAVCTGTCAD
Misc
Kulakovskiy et al.(2013)
MEIS2_MOUSE.H11MO.0.B
0.686
0.691
Meis1
M09568_2.00
Mus musculus
VBTGWCASNN
NNSTGWCAVB
Misc
Heinz et al.(2010)
MastCells-Meis1_GSE48085
0.686
0.691
MEIS1
M10709_2.00
Homo sapiens
NHNTGACAGNDN
NHNCTGTCANDN
Transfac
Matys et al.(2006)
V$MEIS1_01
0.686
0.691
MEIS1
M10710_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEIS1_06
0.686
0.691
MEIS2
M05139_2.00
Homo sapiens
YGACASSYGHCR
YGDCRSSTGTCR
SELEX
Yin et al.(2017)
MEIS2_eDBD_Methyl-HT-SELEX
0.686
0.691
MEIS2
M05141_2.00
Homo sapiens
TGACASSTGTCA
TGACASSTGTCA
SELEX
Yin et al.(2017)
MEIS2_FL_Methyl-HT-SELEX
0.686
0.691
unc-62
M02185_2.00
Caenorhabditis elegans
NHDAHANNN
NNNTDTHDN
PBM
Weirauch et al.(2014)
pTH5781
0.673
0.636
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000006869
Homeodomain
277
334
KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIATQTNLTLLQVNKLFINARRRI
Links
Other
Homeodomain
family TFs
Other
Tetraodon nigroviridis
TFs
575 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy