pknox1.2 (Tetraodon nigroviridis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTNIG00000004244 T216422_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Pknox1
M00399_2.00
Mus musculus
HGACRNNN

NNNYGTCD
PBM
Berger et al.(2008)
Pknox1_2364
0.802 0.945
PKNOX1
M03178_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
PKNOX1_1
0.802 0.945
PKNOX1
M05206_2.00
Homo sapiens
TGACASSTGTCA

TGACASSTGTCA
SELEX
Yin et al.(2017)
PKNOX1_eDBD_HT-SELEX
0.802 0.945
PKNOX1
M05208_2.00
Homo sapiens
TGACAGCTGTCA

TGACAGCTGTCA
SELEX
Yin et al.(2017)
PKNOX1_FL_HT-SELEX
0.802 0.945
PKNOX1
M09150_2.00
Homo sapiens
TGABTGRCRGV

BCYGYCAVTCA
Misc
Kulakovskiy et al.(2013)
PKNX1_HUMAN.H11MO.0.B
0.802 0.945
Pknox1
M09175_2.00
Mus musculus
TGABTGRCRGV

BCYGYCAVTCA
Misc
Kulakovskiy et al.(2013)
PKNX1_MOUSE.H11MO.0.A
0.802 0.945
PKNOX1
M10712_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PREP1_Q3
0.802 0.945
PKNOX1
M05207_2.00
Homo sapiens
YGWCASSTGWCR

YGWCASSTGWCR
SELEX
Yin et al.(2017)
PKNOX1_eDBD_Methyl-HT-SELEX
0.802 0.945
PKNOX1
M05209_2.00
Homo sapiens
TGACABVTGTCA

TGACABVTGTCA
SELEX
Yin et al.(2017)
PKNOX1_FL_Methyl-HT-SELEX
0.802 0.945
Pknox2
M00468_2.00
Mus musculus
NNNGACRNNN

NNNYGTCNNN
PBM
Berger et al.(2008)
Pknox2_3077
0.802 0.909
PKNOX2
M03195_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
PKNOX2_1
0.802 0.909
Pknox2
M03270_2.00
Mus musculus
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
Pknox2_1
0.802 0.909
PKNOX2
M05246_2.00
Homo sapiens
TGACABVTGTCA

TGACABVTGTCA
SELEX
Yin et al.(2017)
PKNOX2_eDBD_HT-SELEX
0.802 0.909
PKNOX2
M05247_2.00
Homo sapiens
TGACASSTGTCA

TGACASSTGTCA
SELEX
Yin et al.(2017)
PKNOX2_eDBD_Methyl-HT-SELEX
0.802 0.909
Meis1
M00407_2.00
Mus musculus
NTGACADNN

NNHTGTCAN
PBM
Berger et al.(2008)
Meis1_2335
0.686 0.691
Meis2
M00437_2.00
Mus musculus
NTGACANNN

NNNTGTCAN
PBM
Berger et al.(2008)
Mrg1_2246
0.686 0.691
Meis3
M00488_2.00
Mus musculus
NTGACANNN

NNNTGTCAN
PBM
Berger et al.(2008)
Mrg2_2302
0.686 0.691
MEIS1
M03165_2.00
Homo sapiens
NTGACAN

NTGTCAN
SELEX
Jolma et al.(2013)
MEIS1_1
0.686 0.691
MEIS2
M03147_2.00
Homo sapiens
WTGACAGSTGTCAM

KTGACASCTGTCAW
SELEX
Jolma et al.(2013)
MEIS2_1
0.686 0.691
MEIS2
M03148_2.00
Homo sapiens
DTGACAGS

SCTGTCAH
SELEX
Jolma et al.(2013)
MEIS2_2
0.686 0.691
Meis2
M03261_2.00
Mus musculus
NTGACAN

NTGTCAN
SELEX
Jolma et al.(2013)
Meis2_1
0.686 0.691
Meis2
M03262_2.00
Mus musculus
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
Meis2_2
0.686 0.691
Meis3
M03279_2.00
Mus musculus
NTGACAN

NTGTCAN
SELEX
Jolma et al.(2013)
Meis3_1
0.686 0.691
Meis3
M03280_2.00
Mus musculus
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
Meis3_2
0.686 0.691
MEIS2
M02740_2.00
Homo sapiens
TGACASSTGTC

GACASSTGTCA
SELEX
Jolma et al.(2010)
MEIS2_dimer
0.686 0.691
MEIS2
M02741_2.00
Homo sapiens
GGACAKNT

ANMTGTCC
SELEX
Jolma et al.(2010)
MEIS2_monomer
0.686 0.691
MEIS2
M05138_2.00
Homo sapiens
TGACASSTGTCA

TGACASSTGTCA
SELEX
Yin et al.(2017)
MEIS2_eDBD_HT-SELEX
0.686 0.691
MEIS2
M05140_2.00
Homo sapiens
TGACASSTGTCA

TGACASSTGTCA
SELEX
Yin et al.(2017)
MEIS2_FL_HT-SELEX
0.686 0.691
hth
M06490_2.00
Drosophila melanogaster
TGACAK

MTGTCA
B1H
Mathelier et al.(2014)
MA0227.1
0.686 0.691
hth
M06252_2.00
Drosophila melanogaster
TGTCA

TGACA
B1H
Zhu et al.(2011)
Hth_Cell_FBgn0001235
0.686 0.691
hth
M06253_2.00
Drosophila melanogaster
NNTGACAD

HTGTCANN
B1H
Zhu et al.(2011)
hth_SOLEXA_2_FBgn0001235
0.686 0.691
hth
M06254_2.00
Drosophila melanogaster
NTGACA

TGTCAN
B1H
Zhu et al.(2011)
Hth_SOLEXA_FBgn0001235
0.686 0.691
MEIS1
M09148_2.00
Homo sapiens
NTGATTDATDDB

VHHATHAATCAN
Misc
Kulakovskiy et al.(2013)
MEIS1_HUMAN.H11MO.0.A
0.686 0.691
MEIS2
M09143_2.00
Homo sapiens
HTGACAGBTKTBM

KVAMAVCTGTCAD
Misc
Kulakovskiy et al.(2013)
MEIS2_HUMAN.H11MO.0.B
0.686 0.691
Meis1
M09178_2.00
Mus musculus
NTGATTDATDDB

VHHATHAATCAN
Misc
Kulakovskiy et al.(2013)
MEIS1_MOUSE.H11MO.0.A
0.686 0.691
Meis2
M09189_2.00
Mus musculus
HTGACAGBTKTBM

KVAMAVCTGTCAD
Misc
Kulakovskiy et al.(2013)
MEIS2_MOUSE.H11MO.0.B
0.686 0.691
Meis1
M09568_2.00
Mus musculus
VBTGWCASNN

NNSTGWCAVB
Misc
Heinz et al.(2010)
MastCells-Meis1_GSE48085
0.686 0.691
MEIS1
M10709_2.00
Homo sapiens
NHNTGACAGNDN

NHNCTGTCANDN
Transfac
Matys et al.(2006)
V$MEIS1_01
0.686 0.691
MEIS1
M10710_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEIS1_06
0.686 0.691
MEIS2
M05139_2.00
Homo sapiens
YGACASSYGHCR

YGDCRSSTGTCR
SELEX
Yin et al.(2017)
MEIS2_eDBD_Methyl-HT-SELEX
0.686 0.691
MEIS2
M05141_2.00
Homo sapiens
TGACASSTGTCA

TGACASSTGTCA
SELEX
Yin et al.(2017)
MEIS2_FL_Methyl-HT-SELEX
0.686 0.691
unc-62
M02185_2.00
Caenorhabditis elegans
NHDAHANNN

NNNTDTHDN
PBM
Weirauch et al.(2014)
pTH5781
0.673 0.636
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000006869 Homeodomain 277 334

Links

Other Homeodomain family TFs
Other Tetraodon nigroviridis TFs

Invalid Input OrderBy

575 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action