CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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irx6a
(
Takifugu rubripes
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSTRUG00000010131
T216717_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ara
M06518_2.00
Drosophila melanogaster
WWACA
TGTWW
B1H
Mathelier et al.(2014)
MA0210.1
0.808
0.860
caup
M06519_2.00
Drosophila melanogaster
WAACA
TGTTW
B1H
Mathelier et al.(2014)
MA0217.1
0.808
0.860
ara
M06313_2.00
Drosophila melanogaster
TGTWWWNN
NNWWWACA
B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904
0.808
0.860
ara
M06314_2.00
Drosophila melanogaster
DWWACA
TGTWWH
B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904
0.808
0.860
caup
M06315_2.00
Drosophila melanogaster
HWDWAACA
TGTTWHWD
B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919
0.808
0.860
caup
M06316_2.00
Drosophila melanogaster
NDDACA
TGTHHN
B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919
0.808
0.860
Irx2
M00386_2.00
Mus musculus
NNDACAHNN
NNDTGTHNN
PBM
Berger et al.(2008)
Irx2_0900
0.800
0.825
Irx5
M00455_2.00
Mus musculus
NNNDACAHN
NDTGTHNNN
PBM
Berger et al.(2008)
Irx5_2385
0.800
0.825
IRX2
M03212_2.00
Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN
SELEX
Jolma et al.(2013)
IRX2_1
0.800
0.825
IRX5
M03222_2.00
Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN
SELEX
Jolma et al.(2013)
IRX5_1
0.800
0.825
IRX5
M05315_2.00
Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN
SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX
0.800
0.825
IRX5
M05316_2.00
Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW
SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX
0.800
0.825
Irx4
M00416_2.00
Mus musculus
NNNDAMAH
DTKTHNNN
PBM
Berger et al.(2008)
Irx4_2242
0.789
0.877
Irx6
M00456_2.00
Mus musculus
NNDAHWN
NWDTHNN
PBM
Berger et al.(2008)
Irx6_2623
0.777
0.842
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000025510
Homeodomain
152
211
TARRKNATRETTSTLKTWLYEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK
Links
Other
Homeodomain
family TFs
Other
Takifugu rubripes
TFs
379 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AAEL011056
Aedes aegypti
AAEL011056
I
0.000
AALB000480
Anopheles albimanus
AALB000480
I
0.000
AARA009394
Anopheles arabiensis
AARA009394
I
0.000
AATE004348
Anopheles atroparvus
AATE004348
I
0.000
ACHR004924
Anopheles christyi
ACHR004924
I
0.000
ACOM024390
Anopheles coluzzii
ACOM024390
I
0.000
ACUA019797
Anopheles culicifacies
ACUA019797
I
0.000
ADAC006780
Anopheles darlingi
ADAC006780
I
0.000
ADIR009436
Anopheles dirus
ADIR009436
I
0.000
AEPI003648
Anopheles epiroticus
AEPI003648
I
0.000
AFUN000987
Anopheles funestus
AFUN000987
I
0.000
AGAP028027
Anopheles gambiae
AGAP028027
I
0.000
AMAM003703
Anopheles maculatus
AMAM003703
I
0.000
AMEC015268
Anopheles melas
AMEC015268
I
0.000
AMEM013195
Anopheles merus
AMEM013195
I
0.000
AMIN001613
Anopheles minimus
AMIN001613
I
0.000
AQUA007895
Anopheles quadriannulatus
AQUA007895
I
0.000
ASTEI04999
Anopheles stephensi
ASTEI04999
I
0.000
CPIJ016623
Culex quinquefasciatus
CPIJ016623
I
0.000
CpipJ_CPIJ016623
Culex pipiens
CpipJ_CPIJ016623
I
0.000
GA10322
Drosophila pseudoobscura
FBgn0070380
I
0.000
GD24173
Drosophila simulans
FBgn0195528
I
0.000
GE13222
Drosophila yakuba
FBgn0230916
I
0.000
GF14690
Drosophila ananassae
FBgn0091717
I
0.000
GG21149
Drosophila erecta
FBgn0113332
I
0.000
GH10835
Drosophila grimshawi
FBgn0118316
I
0.000
GI17350
Drosophila mojavensis
FBgn0140094
I
0.000
GJ16129
Drosophila virilis
FBgn0203314
I
0.000
GK24825
Drosophila willistoni
FBgn0226784
I
0.000
GL18909
Drosophila persimilis
FBgn0156510
I
0.000
GM17313
Drosophila sechellia
FBgn0172223
I
0.000
PPAI009230
Phlebotomus papatasi
PPAI009230
I
0.000
Side
Drosophila melanogaster
FBgn0032741
D
0.000