meis1b (Takifugu rubripes)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTRUG00000011993 T216746_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Meis3
M00488_2.00
Mus musculus
NTGACANNN

NNNTGTCAN
PBM
Berger et al.(2008)
Mrg2_2302
0.867 1.000
Meis3
M03279_2.00
Mus musculus
NTGACAN

NTGTCAN
SELEX
Jolma et al.(2013)
Meis3_1
0.867 1.000
Meis3
M03280_2.00
Mus musculus
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
Meis3_2
0.867 1.000
Meis1
M00407_2.00
Mus musculus
NTGACADNN

NNHTGTCAN
PBM
Berger et al.(2008)
Meis1_2335
0.835 0.982
Meis2
M00437_2.00
Mus musculus
NTGACANNN

NNNTGTCAN
PBM
Berger et al.(2008)
Mrg1_2246
0.835 0.982
MEIS1
M03165_2.00
Homo sapiens
NTGACAN

NTGTCAN
SELEX
Jolma et al.(2013)
MEIS1_1
0.835 0.982
MEIS2
M03147_2.00
Homo sapiens
WTGACAGSTGTCAM

KTGACASCTGTCAW
SELEX
Jolma et al.(2013)
MEIS2_1
0.835 0.982
MEIS2
M03148_2.00
Homo sapiens
DTGACAGS

SCTGTCAH
SELEX
Jolma et al.(2013)
MEIS2_2
0.835 0.982
Meis2
M03261_2.00
Mus musculus
NTGACAN

NTGTCAN
SELEX
Jolma et al.(2013)
Meis2_1
0.835 0.982
Meis2
M03262_2.00
Mus musculus
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
Meis2_2
0.835 0.982
MEIS2
M02740_2.00
Homo sapiens
TGACASSTGTC

GACASSTGTCA
SELEX
Jolma et al.(2010)
MEIS2_dimer
0.835 0.982
MEIS2
M02741_2.00
Homo sapiens
GGACAKNT

ANMTGTCC
SELEX
Jolma et al.(2010)
MEIS2_monomer
0.835 0.982
MEIS2
M05138_2.00
Homo sapiens
TGACASSTGTCA

TGACASSTGTCA
SELEX
Yin et al.(2017)
MEIS2_eDBD_HT-SELEX
0.835 0.982
MEIS2
M05140_2.00
Homo sapiens
TGACASSTGTCA

TGACASSTGTCA
SELEX
Yin et al.(2017)
MEIS2_FL_HT-SELEX
0.835 0.982
MEIS1
M09148_2.00
Homo sapiens
NTGATTDATDDB

VHHATHAATCAN
Misc
Kulakovskiy et al.(2013)
MEIS1_HUMAN.H11MO.0.A
0.835 0.982
MEIS2
M09143_2.00
Homo sapiens
HTGACAGBTKTBM

KVAMAVCTGTCAD
Misc
Kulakovskiy et al.(2013)
MEIS2_HUMAN.H11MO.0.B
0.835 0.982
Meis1
M09178_2.00
Mus musculus
NTGATTDATDDB

VHHATHAATCAN
Misc
Kulakovskiy et al.(2013)
MEIS1_MOUSE.H11MO.0.A
0.835 0.982
Meis2
M09189_2.00
Mus musculus
HTGACAGBTKTBM

KVAMAVCTGTCAD
Misc
Kulakovskiy et al.(2013)
MEIS2_MOUSE.H11MO.0.B
0.835 0.982
Meis1
M09568_2.00
Mus musculus
VBTGWCASNN

NNSTGWCAVB
Misc
Heinz et al.(2010)
MastCells-Meis1_GSE48085
0.835 0.982
MEIS1
M10709_2.00
Homo sapiens
NHNTGACAGNDN

NHNCTGTCANDN
Transfac
Matys et al.(2006)
V$MEIS1_01
0.835 0.982
MEIS1
M10710_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEIS1_06
0.835 0.982
MEIS2
M05139_2.00
Homo sapiens
YGACASSYGHCR

YGDCRSSTGTCR
SELEX
Yin et al.(2017)
MEIS2_eDBD_Methyl-HT-SELEX
0.835 0.982
MEIS2
M05141_2.00
Homo sapiens
TGACASSTGTCA

TGACASSTGTCA
SELEX
Yin et al.(2017)
MEIS2_FL_Methyl-HT-SELEX
0.835 0.982
hth
M06490_2.00
Drosophila melanogaster
TGACAK

MTGTCA
B1H
Mathelier et al.(2014)
MA0227.1
0.835 0.945
hth
M06252_2.00
Drosophila melanogaster
TGTCA

TGACA
B1H
Zhu et al.(2011)
Hth_Cell_FBgn0001235
0.835 0.945
hth
M06253_2.00
Drosophila melanogaster
NNTGACAD

HTGTCANN
B1H
Zhu et al.(2011)
hth_SOLEXA_2_FBgn0001235
0.835 0.945
hth
M06254_2.00
Drosophila melanogaster
NTGACA

TGTCAN
B1H
Zhu et al.(2011)
Hth_SOLEXA_FBgn0001235
0.835 0.945
unc-62
M02185_2.00
Caenorhabditis elegans
NHDAHANNN

NNNTDTHDN
PBM
Weirauch et al.(2014)
pTH5781
0.778 0.818
Pknox1
M00399_2.00
Mus musculus
HGACRNNN

NNNYGTCD
PBM
Berger et al.(2008)
Pknox1_2364
0.751 0.727
Pknox2
M00468_2.00
Mus musculus
NNNGACRNNN

NNNYGTCNNN
PBM
Berger et al.(2008)
Pknox2_3077
0.751 0.727
PKNOX1
M03178_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
PKNOX1_1
0.751 0.727
PKNOX2
M03195_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
PKNOX2_1
0.751 0.727
Pknox2
M03270_2.00
Mus musculus
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
Pknox2_1
0.751 0.727
PKNOX1
M05206_2.00
Homo sapiens
TGACASSTGTCA

TGACASSTGTCA
SELEX
Yin et al.(2017)
PKNOX1_eDBD_HT-SELEX
0.751 0.727
PKNOX1
M05208_2.00
Homo sapiens
TGACAGCTGTCA

TGACAGCTGTCA
SELEX
Yin et al.(2017)
PKNOX1_FL_HT-SELEX
0.751 0.727
PKNOX2
M05246_2.00
Homo sapiens
TGACABVTGTCA

TGACABVTGTCA
SELEX
Yin et al.(2017)
PKNOX2_eDBD_HT-SELEX
0.751 0.727
PKNOX1
M09150_2.00
Homo sapiens
TGABTGRCRGV

BCYGYCAVTCA
Misc
Kulakovskiy et al.(2013)
PKNX1_HUMAN.H11MO.0.B
0.751 0.727
Pknox1
M09175_2.00
Mus musculus
TGABTGRCRGV

BCYGYCAVTCA
Misc
Kulakovskiy et al.(2013)
PKNX1_MOUSE.H11MO.0.A
0.751 0.727
PKNOX1
M10712_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PREP1_Q3
0.751 0.727
PKNOX1
M05207_2.00
Homo sapiens
YGWCASSTGWCR

YGWCASSTGWCR
SELEX
Yin et al.(2017)
PKNOX1_eDBD_Methyl-HT-SELEX
0.751 0.727
PKNOX1
M05209_2.00
Homo sapiens
TGACABVTGTCA

TGACABVTGTCA
SELEX
Yin et al.(2017)
PKNOX1_FL_Methyl-HT-SELEX
0.751 0.727
PKNOX2
M05247_2.00
Homo sapiens
TGACASSTGTCA

TGACASSTGTCA
SELEX
Yin et al.(2017)
PKNOX2_eDBD_Methyl-HT-SELEX
0.751 0.727
achi
M03860_2.00
Drosophila melanogaster
TGACAD

HTGTCA
SELEX
Nitta et al.(2015)
achi_1
0.657 0.527
achi
M03861_2.00
Drosophila melanogaster
TGACAGMTGTCA

TGACAKCTGTCA
SELEX
Nitta et al.(2015)
achi_2
0.657 0.527
achi
M03862_2.00
Drosophila melanogaster
TGACAGNNNNNNYGTCA

TGACRNNNNNNCTGTCA
SELEX
Nitta et al.(2015)
achi_3
0.657 0.527
vis
M03859_2.00
Drosophila melanogaster
TGACAS

STGTCA
SELEX
Nitta et al.(2015)
vis_1
0.657 0.527
vis
M06534_2.00
Drosophila melanogaster
TGACAB

BTGTCA
B1H
Mathelier et al.(2014)
MA0252.1
0.657 0.527
achi
M06535_2.00
Drosophila melanogaster
TGACAG

CTGTCA
B1H
Mathelier et al.(2014)
MA0207.1
0.657 0.527
achi
M06345_2.00
Drosophila melanogaster
TGTCADW

WHTGACA
B1H
Zhu et al.(2011)
Achi_Cell_FBgn0033749
0.657 0.527
achi
M06346_2.00
Drosophila melanogaster
HTGACA

TGTCAD
B1H
Zhu et al.(2011)
Achi_SOLEXA_FBgn0033749
0.657 0.527
vis
M06343_2.00
Drosophila melanogaster
TGTCA

TGACA
B1H
Zhu et al.(2011)
Vis_Cell_FBgn0033748
0.657 0.527
vis
M06344_2.00
Drosophila melanogaster
TGTCAD

HTGACA
B1H
Zhu et al.(2011)
Vis_SOLEXA_FBgn0033748
0.657 0.527
Tgif2
M00521_2.00
Mus musculus
NNTGACANNN

NNNTGTCANN
PBM
Berger et al.(2008)
Tgif2_3451
0.657 0.509
TGIF2
M03123_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
TGIF2_1
0.657 0.509
TGIF2
M05032_2.00
Homo sapiens
TGACABVTGTCA

TGACABVTGTCA
SELEX
Yin et al.(2017)
TGIF2_eDBD_HT-SELEX
0.657 0.509
TGIF2
M05034_2.00
Homo sapiens
DTGACANN

NNTGTCAH
SELEX
Yin et al.(2017)
TGIF2_FL_HT-SELEX
0.657 0.509
TGIF2
M05033_2.00
Homo sapiens
TGWCABVTGWCA

TGWCABVTGWCA
SELEX
Yin et al.(2017)
TGIF2_eDBD_Methyl-HT-SELEX
0.657 0.509
TGIF2
M05035_2.00
Homo sapiens
DTGACANN

NNTGTCAH
SELEX
Yin et al.(2017)
TGIF2_FL_Methyl-HT-SELEX
0.657 0.509
Tgif1
M00500_2.00
Mus musculus
NNTGACANNN

NNNTGTCANN
PBM
Berger et al.(2008)
Tgif1_2342
0.624 0.527
TGIF1
M03223_2.00
Homo sapiens
TGACAGCTGTCA

TGACAGCTGTCA
SELEX
Jolma et al.(2013)
TGIF1_1
0.624 0.527
TGIF1
M05317_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Yin et al.(2017)
TGIF1_eDBD_HT-SELEX
0.624 0.527
TGIF1
M09159_2.00
Homo sapiens
TGACAGS

SCTGTCA
Misc
Kulakovskiy et al.(2013)
TGIF1_HUMAN.H11MO.0.A
0.624 0.527
Tgif1
M09211_2.00
Mus musculus
TGACAGBNV

BNVCTGTCA
Misc
Kulakovskiy et al.(2013)
TGIF1_MOUSE.H11MO.0.A
0.624 0.527
TGIF1
M10740_2.00
Homo sapiens
WHNTGACARST

ASYTGTCANDW
Transfac
Matys et al.(2006)
V$TGIF_01
0.624 0.527
TGIF1
M05318_2.00
Homo sapiens
TGACAKVTGTCA

TGACABMTGTCA
SELEX
Yin et al.(2017)
TGIF1_eDBD_Methyl-HT-SELEX
0.624 0.527
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000030349 Homeodomain 275 332
ENSTRUP00000030350 Homeodomain 274 331
ENSTRUP00000030351 Homeodomain 271 328
ENSTRUP00000030352 Homeodomain 272 329

Links

Other Homeodomain family TFs
Other Takifugu rubripes TFs

795 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
WRKY10 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004208 I 0.000
WRKY10 Arabidopsis thaliana AT1G55600 I 0.000
Bostr.6758s0015 Boechera stricta Bostr.6758s0015 I 0.000
Bo6g051390 Brassica oleracea Bo6g051390 I 0.000
Bo6g034690 Brassica oleracea Bo6g034690 I 0.000
Bo3g185420 Brassica oleracea Bo3g185420 I 0.000
Bo3g185400 Brassica oleracea Bo3g185400 N 0.000
Bo3g184540 Brassica oleracea Bo3g184540 N 0.000
Bo3g180960 Brassica oleracea Bo3g180960 I 0.000
Bo3g180930 Brassica oleracea Bo3g180930 N 0.000
Bra038006 Brassica rapa Bra038006 I 0.000
Bra037106 Brassica rapa Bra037106 I 0.000
Bra030848 Brassica rapa Bra030848 N 0.000
Bra030847 Brassica rapa Bra030847 I 0.000
Cagra.0001s0017 Capsella grandiflora Cagra.0001s0017 I 0.000
Carubv10011619m.g Capsella rubella Carubv10011619m.g N 0.000
evm.TU.supercontig_12.196 Carica papaya evm.TU.supercontig_12.196 I 0.000
gw1.1.699.1 Chlorella vulgaris gw1.1.699.1 I 0.000
Ca_13524 Cicer arietinum Ca_13524 I 0.000
orange1.1g011483m.g Citrus sinensis orange1.1g011483m.g I 0.000
Thhalv10012199m.g Eutrema salsugineum Thhalv10012199m.g I 0.000
gene31843-v1.0-hybrid Fragaria vesca gene31843-v1.0-hybrid I 0.000
GLYMA17G24700 Glycine max GLYMA17G24700 I 0.000
GLYMA06G37100 Glycine max GLYMA06G37100 I 0.000
Gorai.012G119600 Gossypium raimondii Gorai.012G119600 I 0.000
Gorai.003G150700 Gossypium raimondii Gorai.003G150700 I 0.000
MLOC_67851 Hordeum vulgare MLOC_67851 I 0.000
MLOC_58019 Hordeum vulgare MLOC_58019 I 0.000
MLOC_19031 Hordeum vulgare MLOC_19031 I 0.000
Lus10026409.g Linum usitatissimum Lus10026409.g I 0.000
chr2.CM0641.70.nc Lotus japonicus chr2.CM0641.70.nc I 0.000
OBART09G14210 Oryza barthii OBART09G14210 I 0.000
OB04G23060 Oryza brachyantha OB04G23060 I 0.000
OB01G45670 Oryza brachyantha OB01G45670 I 0.000
ORGLA09G0109100 Oryza glaberrima ORGLA09G0109100 I 0.000
OGLUM09G14860 Oryza glumaepatula OGLUM09G14860 I 0.000
OGLUM01G40860 Oryza glumaepatula OGLUM01G40860 I 0.000
BGIOSGA000506 Oryza indica BGIOSGA000506 I 0.000
BGIOSGA029574 Oryza indica BGIOSGA029574 I 0.000
OLONG_005396 Oryza longistaminata OLONG_005396 I 0.000
OMERI09G11000 Oryza meridionalis OMERI09G11000 I 0.000
OMERI04G23060 Oryza meridionalis OMERI04G23060 I 0.000
ONIVA04G13890 Oryza nivara ONIVA04G13890 I 0.000
ONIVA09G14780 Oryza nivara ONIVA09G14780 I 0.000
OPUNC01G35780 Oryza punctata OPUNC01G35780 I 0.000
OPUNC09G12700 Oryza punctata OPUNC09G12700 I 0.000
ORUFI09G15250 Oryza rufipogon ORUFI09G15250 I 0.000
OS09G0481700 Oryza sativa OS09G0481700 I 0.000
Pavir.Eb03559 Panicum virgatum Pavir.Eb03559 I 0.000
Pavir.J27870 Panicum virgatum Pavir.J27870 I 0.000
Pavir.J31756 Panicum virgatum Pavir.J31756 I 0.000
Pavir.J40119 Panicum virgatum Pavir.J40119 I 0.000
Pavir.Bb02418 Panicum virgatum Pavir.Bb02418 I 0.000
Pavir.J13787 Panicum virgatum Pavir.J13787 I 0.000
POPTR_0018s02550 Populus trichocarpa POPTR_0018s02550 N 0.000
SapurV1A.0222s0350 Salix purpurea SapurV1A.0222s0350 I 0.000
SELMODRAFT_59955 Selaginella moellendorffii SELMODRAFT_59955 I 0.000
Si031470m.g Setaria italica Si031470m.g I 0.000
Si029342m.g Setaria italica Si029342m.g I 0.000
Solyc05g050060.1 Solanum lycopersicum Solyc05g050060.1 I 0.000
PGSC0003DMG400006155 Solanum tuberosum PGSC0003DMG400006155 I 0.000
PGSC0003DMG400016769 Solanum tuberosum PGSC0003DMG400016769 I 0.000
PGSC0003DMG400029815 Solanum tuberosum PGSC0003DMG400029815 I 0.000
PGSC0003DMG400011633 Solanum tuberosum PGSC0003DMG400011633 I 0.000
Sb02g027950 Sorghum bicolor Sb02g027950 I 0.000
Traes_5AL_E566BD64E Triticum aestivum Traes_5AL_E566BD64E I 0.000
TRAES3BF090100100CFD_g Triticum aestivum TRAES3BF090100100CFD_g I 0.000
Traes_3AL_3160E1F30 Triticum aestivum Traes_3AL_3160E1F30 I 0.000
TRIUR3_33054 Triticum urartu TRIUR3_33054 I 0.000
TRIUR3_10262 Triticum urartu TRIUR3_10262 I 0.000
TRIUR3_34281 Triticum urartu TRIUR3_34281 I 0.000
GRMZM2G012724 Zea mays GRMZM2G012724 I 0.000
GRMZM2G052671 Zea mays GRMZM2G052671 I 0.000
GRMZM2G449681 Zea mays GRMZM2G449681 I 0.000
GRMZM2G151407 Zea mays GRMZM2G151407 I 0.000