ENSTRUG00000015981 (Takifugu rubripes)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTRUG00000015981 T216790_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hoxa10
M00382_2.00
Mus musculus
NHWAYNNNN

NNNNRTWDN
PBM
Berger et al.(2008)
Hoxa10_2318
0.867 0.982
HOXA10
M05394_2.00
Homo sapiens
RRTCGTAAAAH

DTTTTACGAYY
SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_1
0.867 0.982
HOXA10
M05395_2.00
Homo sapiens
NTTTTATKRCY

RGYMATAAAAN
SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_2
0.867 0.982
HOXA10
M05398_2.00
Homo sapiens
NRTCRTWAANN

NNTTWAYGAYN
SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_1
0.867 0.982
HOXA10
M05399_2.00
Homo sapiens
NNTTWATKRCN

NGYMATWAANN
SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_2
0.867 0.982
Hoxa10
M09170_2.00
Mus musculus
DCATAAAYYRBH

DVYRRTTTATGH
Misc
Kulakovskiy et al.(2013)
HXA10_MOUSE.H11MO.0.C
0.867 0.982
Hoxa10
M10763_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA10_Q5
0.867 0.982
HOXA10
M05396_2.00
Homo sapiens
NGTCGTAAAWN

NWTTTACGACN
SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_1
0.867 0.982
HOXA10
M05397_2.00
Homo sapiens
NTTTTATKRCB

VGYMATAAAAN
SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_2
0.867 0.982
HOXA10
M05400_2.00
Homo sapiens
NRTCGTWAANN

NNTTWACGAYN
SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_1
0.867 0.982
HOXA10
M05401_2.00
Homo sapiens
NNTTWATKRYN

NRYMATWAANN
SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_2
0.867 0.982
Hoxd10
M00509_2.00
Mus musculus
NNNNNNNN

NNNNNNNN
PBM
Berger et al.(2008)
Hoxd10_2368
0.865 0.982
HOXD10
M05112_2.00
Homo sapiens
NKTTTATKRC

GYMATAAAMN
SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_1
0.865 0.982
HOXD10
M05113_2.00
Homo sapiens
RTCGTAAAHN

NDTTTACGAY
SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_2
0.865 0.982
HOXD10
M05116_2.00
Homo sapiens
RGTCGTAAAAH

DTTTTACGACY
SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_1
0.865 0.982
HOXD10
M05117_2.00
Homo sapiens
RRYMATAAAAH

DTTTTATKRYY
SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_2
0.865 0.982
HOXD10
M10687_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD10_Q2
0.865 0.982
HOXD10
M10688_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD10_Q6
0.865 0.982
HOXD10
M05114_2.00
Homo sapiens
NTTTTATKRC

GYMATAAAAN
SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_1
0.865 0.982
HOXD10
M05115_2.00
Homo sapiens
GTCGTAAAHN

NDTTTACGAC
SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_2
0.865 0.982
HOXD10
M05118_2.00
Homo sapiens
VGTCGTAAAAH

DTTTTACGACB
SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_1
0.865 0.982
HOXD10
M05119_2.00
Homo sapiens
DGYAATAAAAH

DTTTTATTRCH
SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_2
0.865 0.982
Hoxc10
M00421_2.00
Mus musculus
TTWATKAB

VTMATWAA
PBM
Berger et al.(2008)
Hoxc10_2779
0.847 0.947
HOXC10
M03228_2.00
Homo sapiens
DTTTWATKDB

VHMATWAAAH
SELEX
Jolma et al.(2013)
HOXC10_1
0.847 0.947
HOXC10
M03229_2.00
Homo sapiens
NNTTWATKRB

VYMATWAANN
SELEX
Jolma et al.(2013)
HOXC10_2
0.847 0.947
HOXC10
M03230_2.00
Homo sapiens
NWTTWAYGAB

VTCRTWAAWN
SELEX
Jolma et al.(2013)
HOXC10_3
0.847 0.947
Hoxc10
M03252_2.00
Mus musculus
DTTTWAYGAY

RTCRTWAAAH
SELEX
Jolma et al.(2013)
Hoxc10_1
0.847 0.947
Hoxc10
M03253_2.00
Mus musculus
DTTTWATKRY

RYMATWAAAH
SELEX
Jolma et al.(2013)
Hoxc10_2
0.847 0.947
HOXC10
M05335_2.00
Homo sapiens
NDTTTATKRCN

NGYMATAAAHN
SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_1
0.847 0.947
HOXC10
M05336_2.00
Homo sapiens
NRTCGTAAAHN

NDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_2
0.847 0.947
HOXC10
M05339_2.00
Homo sapiens
NTTTTATKRCN

NGYMATAAAAN
SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_1
0.847 0.947
HOXC10
M05340_2.00
Homo sapiens
NRTCGTAAAWN

NWTTTACGAYN
SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_2
0.847 0.947
HOXC10
M05337_2.00
Homo sapiens
NTTTTATKRCN

NGYMATAAAAN
SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_1
0.847 0.947
HOXC10
M05338_2.00
Homo sapiens
NRTCGTAAAHN

NDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_2
0.847 0.947
HOXC10
M05341_2.00
Homo sapiens
DTTTTATKRCH

DGYMATAAAAH
SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_1
0.847 0.947
HOXC10
M05342_2.00
Homo sapiens
VGTCGTAAAHN

NDTTTACGACB
SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_2
0.847 0.947
Hoxa9
M00475_2.00
Mus musculus
NNDDBNNN

NNNVHHNN
PBM
Berger et al.(2008)
Hoxa9_2622
0.804 0.825
HOXA9
M03085_2.00
Homo sapiens
NNDTTWAYGAYN

NRTCRTWAAHNN
SELEX
Jolma et al.(2013)
HOXA10_1
0.804 0.825
HOXA9
M03086_2.00
Homo sapiens
NDTTWATKRYN

NRYMATWAAHN
SELEX
Jolma et al.(2013)
HOXA10_2
0.804 0.825
HOXA9
M04932_2.00
Homo sapiens
NNDWWABKRC

GYMVTWWHNN
SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_1
0.804 0.825
HOXA9
M04933_2.00
Homo sapiens
NNDTWAYGRB

VYCRTWAHNN
SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_2
0.804 0.825
Hoxa9
M08138_2.00
Mus musculus
TGATTKATKRB

VYMATMAATCA
ChIP-seq
Mathelier et al.(2014)
MA0594.1
0.804 0.825
HOXA9
M09130_2.00
Homo sapiens
DCATAAAYYRBH

DVYRRTTTATGH
Misc
Kulakovskiy et al.(2013)
HXA10_HUMAN.H11MO.0.C
0.804 0.825
HOXA9
M09131_2.00
Homo sapiens
HHATAAATCAH

DTGATTTATDD
Misc
Kulakovskiy et al.(2013)
HXA9_HUMAN.H11MO.0.B
0.804 0.825
Hoxa9
M09203_2.00
Mus musculus
HHATAAATCAH

DTGATTTATDD
Misc
Kulakovskiy et al.(2013)
HXA9_MOUSE.H11MO.0.B
0.804 0.825
Hoxa9
M09575_2.00
Mus musculus
WGATTKATDRBY

RVYHATMAATCW
Misc
Heinz et al.(2010)
HSC-Hoxa9_GSE33509
0.804 0.825
HOXA9
M10642_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA10_Q6
0.804 0.825
HOXA9
M10643_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA9_04
0.804 0.825
HOXA9
M10644_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA9_Q5_01
0.804 0.825
HOXA9
M10645_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA9_Q5
0.804 0.825
HOXA9
M04934_2.00
Homo sapiens
NNDTWAYKRC

GYMRTWAHNN
SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_1
0.804 0.825
HOXA9
M04935_2.00
Homo sapiens
NNDTWACGAY

RTCGTWAHNN
SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_2
0.804 0.825
Hoxd9
M03282_2.00
Mus musculus
TTTWATKKB

VMMATWAAA
SELEX
Jolma et al.(2013)
Hoxd9_1
0.804 0.807
Hoxd9
M03283_2.00
Mus musculus
DWTTWATKRY

RYMATWAAWH
SELEX
Jolma et al.(2013)
Hoxd9_2
0.804 0.807
Hoxd9
M03284_2.00
Mus musculus
DTTWAYGRB

VYCRTWAAH
SELEX
Jolma et al.(2013)
Hoxd9_3
0.804 0.807
HOXC9
M05331_2.00
Homo sapiens
GTCGTAAAAN

NTTTTACGAC
SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_1
0.804 0.807
HOXC9
M05332_2.00
Homo sapiens
NTTTTATKRC

GYMATAAAAN
SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_2
0.804 0.807
HOXD9
M05104_2.00
Homo sapiens
NTTTTATKRC

GYMATAAAAN
SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_1
0.804 0.807
HOXD9
M05105_2.00
Homo sapiens
RTCRTAAAWN

NWTTTAYGAY
SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_2
0.804 0.807
HOXD9
M05108_2.00
Homo sapiens
RTCGTAAAWN

NWTTTACGAY
SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_1
0.804 0.807
HOXD9
M05109_2.00
Homo sapiens
NTTTTATKRC

GYMATAAAAN
SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_2
0.804 0.807
HOXC9
M09161_2.00
Homo sapiens
HTTWATKGCH

DGCMATWAAD
Misc
Kulakovskiy et al.(2013)
HXC9_HUMAN.H11MO.0.C
0.804 0.807
HOXD9
M10686_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD9_Q2
0.804 0.807
HOXC9
M05333_2.00
Homo sapiens
RTCGTAAAHN

NDTTTACGAY
SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_1
0.804 0.807
HOXC9
M05334_2.00
Homo sapiens
NTTTWATKRC

GYMATWAAAN
SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_2
0.804 0.807
HOXD9
M05106_2.00
Homo sapiens
NNTTWATKRC

GYMATWAANN
SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_1
0.804 0.807
HOXD9
M05107_2.00
Homo sapiens
RTCGTAAANN

NNTTTACGAY
SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_2
0.804 0.807
HOXD9
M05110_2.00
Homo sapiens
RTCGTAAANN

NNTTTACGAY
SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_1
0.804 0.807
HOXD9
M05111_2.00
Homo sapiens
NDTTWATKRC

GYMATWAAHN
SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_2
0.804 0.807
Hoxb9
M00410_2.00
Mus musculus
NTTWAYDDNN

NNHHRTWAAN
PBM
Berger et al.(2008)
Hoxb9_3413
0.804 0.789
HOXB9
M05289_2.00
Homo sapiens
RTCRTAAAWN

NWTTTAYGAY
SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_1
0.804 0.789
HOXB9
M05290_2.00
Homo sapiens
NTTTWATKRC

GYMATWAAAN
SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_2
0.804 0.789
HOXB9
M05291_2.00
Homo sapiens
GTCGTAAAHB

VDTTTACGAC
SELEX
Yin et al.(2017)
HOXB9_eDBD_Methyl-HT-SELEX
0.804 0.789
Hoxc9
M00470_2.00
Mus musculus
NGTAATWAAN

NTTWATTACN
PBM
Berger et al.(2008)
Hoxc9_2367
0.796 0.789
Hoxc9
M08137_2.00
Mus musculus
NWGATTTATDGSH

DSCHATAAATCWN
ChIP-seq
Mathelier et al.(2014)
MA0485.1
0.796 0.789
Hoxc9
M09574_2.00
Mus musculus
TGATTTATDGCH

DGCHATAAATCA
Misc
Heinz et al.(2010)
Ainv15-Hoxc9_GSE21812
0.796 0.789
Hoxd11
M00493_2.00
Mus musculus
DDDNNNNN

NNNNNHHH
PBM
Berger et al.(2008)
Hoxd11_3873
0.764 0.702
HOXD11
M03139_2.00
Homo sapiens
RTCGTAAAWH

DWTTTACGAY
SELEX
Jolma et al.(2013)
HOXD11_1
0.764 0.702
HOXD11
M03140_2.00
Homo sapiens
TTTWATKRBH

DVYMATWAAA
SELEX
Jolma et al.(2013)
HOXD11_2
0.764 0.702
HOXD11
M05120_2.00
Homo sapiens
NRTCGTWAANNDTWAH

DTWAHNNTTWACGAYN
SELEX
Yin et al.(2017)
HOXD11_eDBD_HT-SELEX
0.764 0.702
HOXD11
M05121_2.00
Homo sapiens
NRTCGTWAAHNDTWAH

DTWAHNDTTWACGAYN
SELEX
Yin et al.(2017)
HOXD11_eDBD_Methyl-HT-SELEX
0.764 0.702
Hoxc11
M00390_2.00
Mus musculus
NTTWAYDDBN

NVHHRTWAAN
PBM
Berger et al.(2008)
Hoxc11_3718
0.764 0.684
Hoxa11
M00474_2.00
Mus musculus
NNHNHNNNN

NNNNDNDNN
PBM
Berger et al.(2008)
Hoxa11_2218
0.764 0.684
HOXC11
M03131_2.00
Homo sapiens
NWTTWAYGAYH

DRTCRTWAAWN
SELEX
Jolma et al.(2013)
HOXC11_1
0.764 0.684
HOXC11
M03132_2.00
Homo sapiens
NWTTWATKRBH

DVYMATWAAWN
SELEX
Jolma et al.(2013)
HOXC11_2
0.764 0.684
HOXC11
M03133_2.00
Homo sapiens
DRTCGTWAAWN

NWTTWACGAYH
SELEX
Jolma et al.(2013)
HOXC11_3
0.764 0.684
HOXC11
M03134_2.00
Homo sapiens
NTTTTATKRBN

NVYMATAAAAN
SELEX
Jolma et al.(2013)
HOXC11_4
0.764 0.684
Hoxa11
M03274_2.00
Mus musculus
NNDTTWAYGABN

NVTCRTWAAHNN
SELEX
Jolma et al.(2013)
Hoxa11_1
0.764 0.684
Hoxa11
M03275_2.00
Mus musculus
NDTTWATKRNN

NNYMATWAAHN
SELEX
Jolma et al.(2013)
Hoxa11_2
0.764 0.684
HOXA11
M04897_2.00
Homo sapiens
VGTCGTAAAWH

DWTTTACGACB
SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_1
0.764 0.684
HOXA11
M04898_2.00
Homo sapiens
DDTTWATKRSN

NSYMATWAAHH
SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_2
0.764 0.684
HOXC11
M05075_2.00
Homo sapiens
NDTTWACGAYN

NRTCGTWAAHN
SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_1
0.764 0.684
HOXC11
M05076_2.00
Homo sapiens
NWTTWATKRCH

DGYMATWAAWN
SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_2
0.764 0.684
HOXC11
M05079_2.00
Homo sapiens
NRTCGTWAAHN

NDTTWACGAYN
SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_1
0.764 0.684
HOXC11
M05080_2.00
Homo sapiens
NDTTWATKRSN

NSYMATWAAHN
SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_2
0.764 0.684
HOXA11
M04899_2.00
Homo sapiens
NRTCGTAAAWH

DWTTTACGAYN
SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_1
0.764 0.684
HOXA11
M04900_2.00
Homo sapiens
DYTTTATKRCH

DGYMATAAARH
SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_2
0.764 0.684
HOXC11
M05077_2.00
Homo sapiens
NRTCGTAAAHN

NDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_1
0.764 0.684
HOXC11
M05078_2.00
Homo sapiens
NDTTTATKRSN

NSYMATAAAHN
SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_2
0.764 0.684
HOXC11
M05081_2.00
Homo sapiens
NRTCGTWAANN

NNTTWACGAYN
SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_1
0.764 0.684
HOXC11
M05082_2.00
Homo sapiens
NNTTWAYKRSN

NSYMRTWAANN
SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_2
0.764 0.684
Abd-B
M00554_2.00
Drosophila melanogaster
NWTWAYDDNN

NNHHRTWAWN
PBM
Busser et al.(2012a)
Abd-B
0.651 0.684
Abd-B
M03772_2.00
Drosophila melanogaster
DRTCRTAAAWH

DWTTTAYGAYH
SELEX
Nitta et al.(2015)
Abd-B_1
0.651 0.684
Abd-B
M03773_2.00
Drosophila melanogaster
DTTTTATKRCY

RGYMATAAAAH
SELEX
Nitta et al.(2015)
Abd-B_2
0.651 0.684
Abd-B
M03774_2.00
Drosophila melanogaster
NKCARYAACGACYW

WRGTCGTTRYTGMN
SELEX
Nitta et al.(2015)
Abd-B_3
0.651 0.684
Abd-B
M03775_2.00
Drosophila melanogaster
DTTTWATGKSTTTY

RAAASMCATWAAAH
SELEX
Nitta et al.(2015)
Abd-B_4
0.651 0.684
Abd-B
M06476_2.00
Drosophila melanogaster
TTTATKR

YMATAAA
B1H
Mathelier et al.(2014)
MA0165.1
0.651 0.684
Abd-B
M06211_2.00
Drosophila melanogaster
YCATAAAA

TTTTATGR
B1H
Zhu et al.(2011)
Abd-B_FlyReg_FBgn0000015
0.651 0.684
Abd-B
M09672_2.00
Drosophila melanogaster
YMATAAAAHH

DDTTTTATKR
Misc
Kulakovskiy et al.(2009)
Abd-B
0.651 0.684
Abd-B
M10779_2.00
Drosophila melanogaster
VSNTTDATKRCNNN

NNNGYMATHAANSB
Transfac
Matys et al.(2006)
I$ABDB_01
0.651 0.684
Abd-B
M10780_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$ABDB_Q6
0.651 0.684
abd-A
M03770_2.00
Drosophila melanogaster
NNTAATKRCN

NGYMATTANN
SELEX
Nitta et al.(2015)
abd-A_1
0.623 0.702
abd-A
M03771_2.00
Drosophila melanogaster
NNTAATKRCN

NGYMATTANN
SELEX
Nitta et al.(2015)
abd-A_2
0.623 0.702
abd-A
M06475_2.00
Drosophila melanogaster
TTAATKA

TMATTAA
B1H
Mathelier et al.(2014)
MA0206.1
0.623 0.702
abd-A
M06210_2.00
Drosophila melanogaster
WTWATKDM

KHMATWAW
B1H
Zhu et al.(2011)
Abd-A_FlyReg_FBgn0000014
0.623 0.702
abd-A
M09671_2.00
Drosophila melanogaster
HTAATKRH

DYMATTAD
Misc
Kulakovskiy et al.(2009)
abd-A
0.623 0.702
abd-A
M10778_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$ABDA_Q6
0.623 0.702
Ubx
M00558_2.00
Drosophila melanogaster
NWWAYDDNN

NNHHRTWWN
PBM
Busser et al.(2012a)
Ubx
0.614 0.667
Ubx
M03804_2.00
Drosophila melanogaster
NTAATKRH

DYMATTAN
SELEX
Nitta et al.(2015)
Ubx_1
0.614 0.667
Ubx
M06499_2.00
Drosophila melanogaster
NTTAATKR

YMATTAAN
B1H
Mathelier et al.(2014)
MA0094.2
0.614 0.667
Ubx
M06273_2.00
Drosophila melanogaster
NTTAATKR

YMATTAAN
B1H
Zhu et al.(2011)
Ubx_Cell_FBgn0003944
0.614 0.667
Ubx
M06274_2.00
Drosophila melanogaster
TAATKD

HMATTA
B1H
Zhu et al.(2011)
Ubx_FlyReg_FBgn0003944
0.614 0.667
Ubx
M06275_2.00
Drosophila melanogaster
NTTWATKR

YMATWAAN
B1H
Zhu et al.(2011)
Ubx_SOLEXA_FBgn0003944
0.614 0.667
Ubx
M09680_2.00
Drosophila melanogaster
TTAATKR

YMATTAA
Misc
Kulakovskiy et al.(2009)
Ubx
0.614 0.667
Ubx
M10788_2.00
Drosophila melanogaster
NNVNNNNTAATKRNBHNND

HNNDVNYMATTANNNNBNN
Transfac
Matys et al.(2006)
I$UBX_01
0.614 0.667
CBG00023
M02062_2.00
Caenorhabditis briggsae
NWWATKDNNN

NNNHMATWWN
PBM
Weirauch et al.(2014)
pTH5778
0.608 0.491
egl-5
M09581_2.00
Caenorhabditis elegans
DWTTWATGGS

SCCATWAAWH
Misc
Heinz et al.(2010)
cElegans-L3-EGL5_modEncode
0.608 0.491
Hoxa6
M00494_2.00
Mus musculus
NWWATKRNN

NNYMATWWN
PBM
Berger et al.(2008)
Hoxa6_1040
0.607 0.684
HOXA6
M04974_2.00
Homo sapiens
NNTAATKRVN

NBYMATTANN
SELEX
Yin et al.(2017)
HOXA6_eDBD_HT-SELEX
0.607 0.684
HOXA6
M04975_2.00
Homo sapiens
NNTAATKRBN

NVYMATTANN
SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_1
0.607 0.684
HOXA6
M04976_2.00
Homo sapiens
NTAAYGRY

RYCRTTAN
SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_2
0.607 0.684
Hoxc6
M00392_2.00
Mus musculus
TTAATTAB

VTAATTAA
PBM
Berger et al.(2008)
Hoxc6_3954
0.607 0.667
Q8I9J5_9BILA
M02214_2.00
Spadella cephaloptera
NVTAWTWABN

NVTWAWTABN
PBM
Weirauch et al.(2014)
pTH6164
0.605 0.579
Hoxc8
M00391_2.00
Mus musculus
NNDNYNNNN

NNNNRNHNN
PBM
Berger et al.(2008)
Hoxc8_3429
0.605 0.702
Hoxd8
M00436_2.00
Mus musculus
NNWWYNNN

NNNRWWNN
PBM
Berger et al.(2008)
Hoxd8_2644
0.605 0.702
Hoxb8
M00517_2.00
Mus musculus
NWWAYNDNN

NNHNRTWWN
PBM
Berger et al.(2008)
Hoxb8_3780
0.605 0.702
HOXD8
M03221_2.00
Homo sapiens
VHWAATKWDN

NHWMATTWDB
SELEX
Jolma et al.(2013)
HOXD8_1
0.605 0.702
HOXB8
M05048_2.00
Homo sapiens
NTAATKRM

KYMATTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_HT-SELEX
0.605 0.702
HOXC8
M04912_2.00
Homo sapiens
NYAATTRN

NYAATTRN
SELEX
Yin et al.(2017)
HOXC8_FL_HT-SELEX
0.605 0.702
HOXD8
M05310_2.00
Homo sapiens
BTAATKRY

RYMATTAV
SELEX
Yin et al.(2017)
HOXD8_eDBD_HT-SELEX
0.605 0.702
HOXB8
M09141_2.00
Homo sapiens
BMATHAATCAA

TTGATTDATKV
Misc
Kulakovskiy et al.(2013)
HXB8_HUMAN.H11MO.0.C
0.605 0.702
Hoxb8
M09214_2.00
Mus musculus
BMATHAATCAA

TTGATTDATKV
Misc
Kulakovskiy et al.(2013)
HXB8_MOUSE.H11MO.0.C
0.605 0.702
HOXC8
M10636_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXC8_Q3
0.605 0.702
HOXB8
M05049_2.00
Homo sapiens
NTAATKRN

NYMATTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_1
0.605 0.702
HOXB8
M05050_2.00
Homo sapiens
NTAAYGAY

RTCRTTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_2
0.605 0.702
HOXC8
M04913_2.00
Homo sapiens
NYMATKRN

NYMATKRN
SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_1
0.605 0.702
HOXC8
M04914_2.00
Homo sapiens
NTWAYGRY

RYCRTWAN
SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_2
0.605 0.702
HOXD8
M05311_2.00
Homo sapiens
NTAATKRN

NYMATTAN
SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_1
0.605 0.702
HOXD8
M05312_2.00
Homo sapiens
NTWAYGRY

RYCRTWAN
SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_2
0.605 0.702
Hoxc12
M00508_2.00
Mus musculus
NDTWAYNDBN

NVHNRTWAHN
PBM
Berger et al.(2008)
Hoxc12_3480
0.603 0.632
HOXC12
M03135_2.00
Homo sapiens
TTTTATTRY

RYAATAAAA
SELEX
Jolma et al.(2013)
HOXC12_1
0.603 0.632
HOXC12
M03136_2.00
Homo sapiens
RRTCGTAAAAH

DTTTTACGAYY
SELEX
Jolma et al.(2013)
HOXC12_2
0.603 0.632
HOXC12
M05083_2.00
Homo sapiens
NGYAATAAAAN

NTTTTATTRCN
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1
0.603 0.632
HOXC12
M05084_2.00
Homo sapiens
VRTCGTAAAHN

NDTTTACGAYB
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2
0.603 0.632
HOXC12
M05085_2.00
Homo sapiens
NGYAATAAAAH

DTTTTATTRCN
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1
0.603 0.632
HOXC12
M05086_2.00
Homo sapiens
NRTCGTAAAHH

DDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2
0.603 0.632
Hoxd12_CONSTRUCT
M00538_2.00
PBM CONSTRUCTS
NWTWAYNDBN

NVHNRTWAWN
PBM
Berger et al.(2008)
Hoxd12_3481
0.603 0.614
HOXD12
M03206_2.00
Homo sapiens
SYAATAAAA

TTTTATTRS
SELEX
Jolma et al.(2013)
HOXD12_1
0.603 0.614
HOXD12
M03207_2.00
Homo sapiens
RVTCGTAAAAH

DTTTTACGABY
SELEX
Jolma et al.(2013)
HOXD12_2
0.603 0.614
HOXD12
M03208_2.00
Homo sapiens
NRTCGTAAAHN

NDTTTACGAYN
SELEX
Jolma et al.(2013)
HOXD12_3
0.603 0.614
HOXD12
M03209_2.00
Homo sapiens
DTTWATYRC

GYRATWAAH
SELEX
Jolma et al.(2013)
HOXD12_4
0.603 0.614
HOXD12
M05279_2.00
Homo sapiens
NKTWACGAYN

NRTCGTWAMN
SELEX
Yin et al.(2017)
HOXD12_eDBD_HT-SELEX
0.603 0.614
HOXD12
M05280_2.00
Homo sapiens
NRTCGTAAAH

DTTTACGAYN
SELEX
Yin et al.(2017)
HOXD12_eDBD_Methyl-HT-SELEX
0.603 0.614
Hoxb6
M00381_2.00
Mus musculus
NNDHNNN

NNNDHNN
PBM
Berger et al.(2008)
Hoxb6_3428
0.603 0.667
HOXB6
M04999_2.00
Homo sapiens
NTAATKRY

RYMATTAN
SELEX
Yin et al.(2017)
HOXB6_eDBD_HT-SELEX
0.603 0.667
HOXB6
M05000_2.00
Homo sapiens
HTAAYGAY

RTCRTTAD
SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_1
0.603 0.667
HOXB6
M05001_2.00
Homo sapiens
NTWATKRB

VYMATWAN
SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_2
0.603 0.667
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000040853 Homeodomain 504 560
ENSTRUP00000040854 Homeodomain 221 277
ENSTRUP00000040854 Homeodomain 623 679
ENSTRUP00000040855 Homeodomain 286 342

Links

Other Homeodomain family TFs
Other Takifugu rubripes TFs

1394 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACYPI000347 Acyrthosiphon pisum ACYPI000347 I 0.000
AAEL000341 Aedes aegypti AAEL000341 I 0.000
BHLHE22 Anolis carolinensis ENSACAG00000016834 I 0.000
AALB000147 Anopheles albimanus AALB000147 I 0.000
AARA008760 Anopheles arabiensis AARA008760 I 0.000
AATE004759 Anopheles atroparvus AATE004759 I 0.000
ACHR009203 Anopheles christyi ACHR009203 I 0.000
ACOM027056 Anopheles coluzzii ACOM027056 I 0.000
ACUA002460 Anopheles culicifacies ACUA002460 I 0.000
ADAC006720 Anopheles darlingi ADAC006720 I 0.000
ADIR006306 Anopheles dirus ADIR006306 I 0.000
AEPI003977 Anopheles epiroticus AEPI003977 I 0.000
AFAF017781 Anopheles farauti AFAF017781 I 0.000
AFUN005189 Anopheles funestus AFUN005189 I 0.000
AGAP009227 Anopheles gambiae AGAP009227 I 0.000
AMAM023008 Anopheles maculatus AMAM023008 I 0.000
AMEC008134 Anopheles melas AMEC008134 I 0.000
AMEM014256 Anopheles merus AMEM014256 I 0.000
AMIN009758 Anopheles minimus AMIN009758 I 0.000
AQUA010475 Anopheles quadriannulatus AQUA010475 I 0.000
ASIS008310 Anopheles sinensis ASIS008310 I 0.000
ASTEI052404 Anopheles stephensi ASTEI052404 I 0.000
GB45050 Apis mellifera GB45050 I 0.000
Afo_R010903 Aptenodytes forsteri Afo_R010903 I 0.000
ENSAMXG00000026338 Astyanax mexicanus ENSAMXG00000026338 I 0.000
ENSAMXG00000025627 Astyanax mexicanus ENSAMXG00000025627 I 0.000
ACEP10921 Atta cephalotes ACEP10921 I 0.000
BGLB010842 Biomphalaria glabrata BGLB010842 I 0.000
BGIBMGA003134 Bombyx mori BGIBMGA003134 I 0.000
ENSBTAP00000014445-D1 Bos grunniens ENSBTAP00000014445-D1 I 0.000
BHLHE23 Bos taurus ENSBTAG00000010873 I 0.000
BHLHE22 Bos taurus ENSBTAG00000033173 I 0.000
fgenesh2_pg.scaffold_122000082 Branchiostoma floridae fgenesh2_pg.scaffold_122000082 I 0.000
BHLHE23 Callithrix jacchus ENSCJAG00000010053 I 0.000
BHLHE22 Callithrix jacchus ENSCJAG00000009234 I 0.000
Cflo_04767--XP_001122321.1_APIME Camponotus floridanus Cflo_04767--XP_001122321.1_APIME I 0.000
CapteG184404 Capitella teleta CapteG184404 I 0.000
BHLHE22 Cavia porcellus ENSCPOG00000004652 I 0.000
ENSCSAG00000018550 Chlorocebus sabaeus ENSCSAG00000018550 I 0.000
ENSCSAG00000018736 Chlorocebus sabaeus ENSCSAG00000018736 I 0.000
CGI_10006402 Crassostrea gigas CGI_10006402 I 0.000
CpipJ_CPIJ000843 Culex pipiens CpipJ_CPIJ000843 I 0.000
CPIJ000843 Culex quinquefasciatus CPIJ000843 I 0.000
bhlhe22 Danio rerio ENSDARG00000058039 I 0.000
bhlhe23 Danio rerio ENSDARG00000037588 I 0.000
DAPPUDRAFT_17020 Daphnia pulex DAPPUDRAFT_17020 I 0.000
BHLHE23 Dasypus novemcinctus ENSDNOG00000036826 I 0.000
BHLHE22 Dasypus novemcinctus ENSDNOG00000004738 I 0.000
YQE_08596 Dendroctonus ponderosae YQE_08596 I 0.000
ENSDORG00000012788 Dipodomys ordii ENSDORG00000012788 I 0.000
GF14803 Drosophila ananassae FBgn0091830 I 0.000
GG21094 Drosophila erecta FBgn0113277 I 0.000
GH11626 Drosophila grimshawi FBgn0119106 I 0.000
Oli Drosophila melanogaster FBgn0032651 D 0.000
GI17928 Drosophila mojavensis FBgn0140669 I 0.000
GL14513 Drosophila persimilis FBgn0152118 I 0.000
GA18959 Drosophila pseudoobscura FBgn0078958 I 0.000
GM17248 Drosophila sechellia FBgn0172159 I 0.000
GD24118 Drosophila simulans FBgn0195474 I 0.000
GJ17701 Drosophila virilis FBgn0204870 I 0.000
GK18164 Drosophila willistoni FBgn0220163 I 0.000
GE12799 Drosophila yakuba FBgn0230520 I 0.000
ECPE_0000755301 Echinostoma caproni ECPE_0000755301 I 0.000
D915_05889 Fasciola hepatica D915_05889 I 0.000
ENSFALG00000010468 Ficedula albicollis ENSFALG00000010468 I 0.000
ENSGMOG00000014009 Gadus morhua ENSGMOG00000014009 I 0.000
ENSGMOG00000019833 Gadus morhua ENSGMOG00000019833 I 0.000
BHLHE23 Gallus gallus ENSGALG00000005718 I 0.000
bhlhe22 Gasterosteus aculeatus ENSGACG00000002995 I 0.000
BHLHE23 Gorilla gorilla ENSGGOG00000025870 I 0.000
Hsal_10753--XP_001122321.1_APIME Harpegnathos saltator Hsal_10753--XP_001122321.1_APIME I 0.000
HelroG128595 Helobdella robusta HelroG128595 I 0.000
BHLHE22 Homo sapiens ENSG00000180828 D 0.000
BHLHE23 Homo sapiens ENSG00000125533 D 0.000
ISCW009607 Ixodes scapularis ISCW009607 I 0.000
ENSLACG00000007038 Latimeria chalumnae ENSLACG00000007038 I 0.000
ENSLACG00000016169 Latimeria chalumnae ENSLACG00000016169 I 0.000
ENSLOCG00000018362 Lepisosteus oculatus ENSLOCG00000018362 I 0.000
ENSLOCG00000017814 Lepisosteus oculatus ENSLOCG00000017814 I 0.000
LDEC023792 Leptinotarsa decemlineata LDEC023792 I 0.000
LCUP009688 Lucilia cuprina LCUP009688 I 0.000
LLOJ009613 Lutzomyia longipalpis LLOJ009613 I 0.000
ENSMMUG00000028979 Macaca mulatta ENSMMUG00000028979 I 0.000
MESCA002512 Megaselia scalaris MESCA002512 I 0.000
BHLHE23 Meleagris gallopavo ENSMGAG00000006134 I 0.000
MCINX007709 Melitaea cinxia MCINX007709 I 0.000
BHLHE23 Monodelphis domestica ENSMODG00000023267 I 0.000
BHLHE22 Monodelphis domestica ENSMODG00000008228 I 0.000
MDOA001134 Musca domestica MDOA001134 I 0.000
Bhlhe22 Mus musculus ENSMUSG00000025128 D 0.000
Bhlhe23 Mus musculus ENSMUSG00000045493 I 0.000
BHLHE22 Myotis lucifugus ENSMLUG00000002156 I 0.000
NV11426 Nasonia vitripennis NV11426 I 0.000
ENSNLEG00000019167 Nomascus leucogenys ENSNLEG00000019167 I 0.000
Ogr12490 Ophisaurus gracilis Ogr12490 I 0.000
ENSONIG00000021146 Oreochromis niloticus ENSONIG00000021146 I 0.000
ENSONIG00000020419 Oreochromis niloticus ENSONIG00000020419 I 0.000
BHLHE23 Ornithorhynchus anatinus ENSOANG00000004969 I 0.000
BHLHE22 Oryctolagus cuniculus ENSOCUG00000012968 I 0.000
bhlhe23 Oryzias latipes ENSORLG00000009742 I 0.000
bhlhe22 Oryzias latipes ENSORLG00000008625 I 0.000
BHLHE22 Otolemur garnettii ENSOGAG00000034883 I 0.000
ENSOARG00000016973 Ovis aries ENSOARG00000016973 I 0.000
ENSOARG00000011555 Ovis aries ENSOARG00000011555 I 0.000
BHLHE23 Pan troglodytes ENSPTRG00000013728 I 0.000
ENSPANG00000006045 Papio anubis ENSPANG00000006045 I 0.000
ENSPANG00000014258 Papio anubis ENSPANG00000014258 I 0.000
PHUM507440 Pediculus humanus PHUM507440 I 0.000
ENSPFOG00000020723 Poecilia formosa ENSPFOG00000020723 I 0.000
Pvit_14990 Pogona vitticeps Pvit_14990 I 0.000
ENSPPYG00000018628 Pongo abelii ENSPPYG00000018628 I 0.000
BHLHE23 Procavia capensis ENSPCAG00000008163 I 0.000
Bhlhe23 Rattus norvegicus ENSRNOG00000010312 I 0.000
Bhlhe22 Rattus norvegicus ENSRNOG00000021745 I 0.000
Sakowv30001655m.g Saccoglossus kowalevskii Sakowv30001655m.g I 0.000
ENSSHAG00000008128 Sarcophilus harrisii ENSSHAG00000008128 I 0.000
SCUD_0001512501 Schistosoma curassoni SCUD_0001512501 I 0.000
A_00716 Schistosoma haematobium A_00716 I 0.000
Sjc_0013770 Schistosoma japonicum Sjc_0013770 I 0.000
Smp_000620 Schistosoma mansoni Smp_000620 I 0.000
SMRZ_0001201801 Schistosoma margrebowiei SMRZ_0001201801 I 0.000
SMTD_0000281901 Schistosoma mattheei SMTD_0000281901 I 0.000
SROB_0002375401 Schistosoma rodhaini SROB_0002375401 I 0.000
SMU15011543 Schmidtea mediterranea SMU15011543 I 0.000
SINV14285 Solenopsis invicta SINV14285 I 0.000
SMAR007739 Strigamia maritima SMAR007739 I 0.000
SPU_026601 Strongylocentrotus purpuratus SPU_026601 I 0.000
SPU_004028 Strongylocentrotus purpuratus SPU_004028 I 0.000
BHLHE22 Sus scrofa ENSSSCG00000006222 I 0.000
bhlhe22 Takifugu rubripes ENSTRUG00000007963 I 0.000
bhlhe23 Takifugu rubripes ENSTRUG00000005237 I 0.000
bhlhe22 Takifugu rubripes ENSTRUG00000003506 I 0.000
tetur13g02560 Tetranychus urticae tetur13g02560 I 0.000
bhlhe22 Tetraodon nigroviridis ENSTNIG00000012697 I 0.000
bhlhe23 Tetraodon nigroviridis ENSTNIG00000017879 I 0.000
TC014712 Tribolium castaneum TC014712 I 0.000
TRE_0001403601 Trichobilharzia regenti TRE_0001403601 I 0.000
bhlhe23 Xenopus tropicalis XB-GENE-1018550 I 0.000
bhlhe22 Xenopus tropicalis XB-GENE-6457792 I 0.000
ENSXMAG00000019916 Xiphophorus maculatus ENSXMAG00000019916 I 0.000
ENSXMAG00000020159 Xiphophorus maculatus ENSXMAG00000020159 I 0.000