bap (Drosophila melanogaster)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 FBgn0004862 T217443_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
bap
M00560_2.00
Drosophila melanogaster
NDAAGTRBNN

NNVYACTTHN
PBM
Busser et al.(2012a)
Bap
(Direct) (Direct)
bap
M02119_2.00
Drosophila melanogaster
NYTAAGTRSNN

NNSYACTTARN
PBM
Weirauch et al.(2014)
pTH5945
(Direct) (Direct)
bap
M03812_2.00
Drosophila melanogaster
NNTAAGTGBN

NVCACTTANN
SELEX
Nitta et al.(2015)
bap_1
(Direct) (Direct)
bap
M06287_2.00
Drosophila melanogaster
NBTTAAGTRN

NYACTTAAVN
B1H
Zhu et al.(2011)
Bap_Cell_FBgn0004862
(Direct) (Direct)
bap
M06288_2.00
Drosophila melanogaster
NYTAAKTR

YAMTTARN
B1H
Zhu et al.(2011)
Bap_SOLEXA_FBgn0004862
(Direct) (Direct)
bap
M06504_2.00
Drosophila melanogaster
TTAAGTR

YACTTAA
B1H
Mathelier et al.(2014)
MA0211.1
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nkx3-2
M00506_2.00
Mus musculus
NNRAGDRNN

NNYHCTYNN
PBM
Berger et al.(2008)
Bapx1_2343
0.855 0.877
NKX3-2
M05012_2.00
Homo sapiens
NNTAAGTGSN

NSCACTTANN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_HT-SELEX
0.855 0.877
NKX3-2
M09138_2.00
Homo sapiens
TTAAGTGBNH

DNVCACTTAA
Misc
Kulakovskiy et al.(2013)
NKX32_HUMAN.H11MO.0.C
0.855 0.877
Nkx3-2
M09212_2.00
Mus musculus
TTAAGTGBNH

DNVCACTTAA
Misc
Kulakovskiy et al.(2013)
NKX32_MOUSE.H11MO.0.B
0.855 0.877
NKX3-2
M10663_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX32_01
0.855 0.877
NKX3-2
M05013_2.00
Homo sapiens
NNTAAGTGBN

NVCACTTANN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_1
0.855 0.877
NKX3-2
M05014_2.00
Homo sapiens
NTAACGHB

VDCGTTAN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_2
0.855 0.877
ENSCING00000007395
M02076_2.00
Ciona intestinalis
NNNDWNWR

YWNWHNNN
PBM
Weirauch et al.(2014)
pTH5922
0.829 0.719
Nkx3-1
M00170_2.00
Mus musculus
NDAAGTRBNN

NNVYACTTHN
PBM
Badis et al.(2009)
Nkx3-1_2923
0.827 0.789
Nkx3-1
M00420_2.00
Mus musculus
NNAAGTRBNN

NNVYACTTNN
PBM
Berger et al.(2008)
Nkx3-1_2923
0.827 0.789
NKX3-1
M05255_2.00
Homo sapiens
NNTAAGTGSN

NSCACTTANN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_HT-SELEX
0.827 0.789
NKX3-1
M09154_2.00
Homo sapiens
NYDAAGTGBYWD

HWRVCACTTHRN
Misc
Kulakovskiy et al.(2013)
NKX31_HUMAN.H11MO.0.C
0.827 0.789
Nkx3-1
M09184_2.00
Mus musculus
NYDAAGTGBYWD

HWRVCACTTHRN
Misc
Kulakovskiy et al.(2013)
NKX31_MOUSE.H11MO.0.C
0.827 0.789
NKX3-1
M09559_2.00
Homo sapiens
BTRAGTRBYY

RRVYACTYAV
Misc
Heinz et al.(2010)
LNCaP-Nkx3.1_GSE28264
0.827 0.789
NKX3-1
M10729_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_01
0.827 0.789
NKX3-1
M10730_2.00
Homo sapiens
NWWTAAGTATWH

DWATACTTAWWN
Transfac
Matys et al.(2006)
V$NKX3A_01
0.827 0.789
NKX3-1
M10731_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX3A_Q3
0.827 0.789
NKX3-1
M05256_2.00
Homo sapiens
NNTAAGTGBN

NVCACTTANN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_1
0.827 0.789
NKX3-1
M05257_2.00
Homo sapiens
NTAAYSWB

VWSRTTAN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_2
0.827 0.789
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00560_2.00 Homeodomain 16 72
M02119_2.00 Homeodomain 1 57

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0083486 Homeodomain 176 232

Links

Other Homeodomain family TFs
Other Drosophila melanogaster TFs

222 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACYPI002893 Acyrthosiphon pisum ACYPI002893 I 0.859
AAEL006597 Aedes aegypti AAEL006597 I 0.862
ENSAMEG00000002866 Ailuropoda melanoleuca ENSAMEG00000002866 I 0.827
ENSAMEG00000009342 Ailuropoda melanoleuca ENSAMEG00000009342 I 0.855
Alligator_sinensis_CCG000534.1 Alligator sinensis Alligator_sinensis_CCG000534.1 I 0.855
ENSAPLG00000014690 Anas platyrhynchos ENSAPLG00000014690 I 0.827
ASIM_0001224701 Anisakis simplex ASIM_0001224701 I 0.610
ENSACAG00000026683 Anolis carolinensis ENSACAG00000026683 I 0.827
AARA010121 Anopheles arabiensis AARA010121 I 0.850
AATE016309 Anopheles atroparvus AATE016309 I 0.850
ACHR006588 Anopheles christyi ACHR006588 I 0.850
ACOM028774 Anopheles coluzzii ACOM028774 I 0.850
ACUA019412 Anopheles culicifacies ACUA019412 I 0.850
ADAC003526 Anopheles darlingi ADAC003526 I 0.850
ADIR005347 Anopheles dirus ADIR005347 I 0.850
AEPI001627 Anopheles epiroticus AEPI001627 I 0.850
AFAF013479 Anopheles farauti AFAF013479 I 0.850
AFUN008966 Anopheles funestus AFUN008966 I 0.850
AGAP003671 Anopheles gambiae AGAP003671 I 0.850
AMAM011860 Anopheles maculatus AMAM011860 I 0.850
AMEC017317 Anopheles melas AMEC017317 I 0.850
AMEM005009 Anopheles merus AMEM005009 I 0.850
AMIN004031 Anopheles minimus AMIN004031 I 0.850
AQUA001538 Anopheles quadriannulatus AQUA001538 I 0.850
ASIS007650 Anopheles sinensis ASIS007650 I 0.850
ASTEI07437 Anopheles stephensi ASTEI07437 I 0.850
GB47401 Apis mellifera GB47401 I 0.837
ENSAMXG00000015414 Astyanax mexicanus ENSAMXG00000015414 I 0.604
ENSAMXG00000024837 Astyanax mexicanus ENSAMXG00000024837 I 0.841
ENSAMXG00000009415 Astyanax mexicanus ENSAMXG00000009415 I 0.648
ENSAMXG00000003840 Astyanax mexicanus ENSAMXG00000003840 I 0.855
ENSAMXG00000002250 Astyanax mexicanus ENSAMXG00000002250 I 0.841
ACEP23863 Atta cephalotes ACEP23863 I 0.837
BGLB010692 Biomphalaria glabrata BGLB010692 I 0.810
BGIBMGA010706 Bombyx mori BGIBMGA010706 I 0.858
ENSBTAP00000001615-D1 Bos grunniens ENSBTAP00000001615-D1 I 0.827
NKX3-1 Bos taurus ENSBTAG00000001221 I 0.827
NKX3-2 Bos taurus ENSBTAG00000010896 I 0.855
estExt_fgenesh2_pg.C_1430013 Branchiostoma floridae estExt_fgenesh2_pg.C_1430013 I 0.843
BTMF_0000772101 Brugia timori BTMF_0000772101 I 0.619
NKX3-2 Callithrix jacchus ENSCJAG00000012159 I 0.855
NKX3-1 Callithrix jacchus ENSCJAG00000020092 I 0.827
Aan_R009530 Calypte anna Aan_R009530 I 0.710
NKX2-6 Canis familiaris ENSCAFG00000024691 I 0.605
NKX3-2 Canis familiaris ENSCAFG00000015412 I 0.855
ENSCAFG00000009107 Canis familiaris ENSCAFG00000009107 I 0.827
CapteG79432 Capitella teleta CapteG79432 I 0.833
NKX3-2 Cavia porcellus ENSCPOG00000005449 I 0.855
ENSCPOG00000010557 Cavia porcellus ENSCPOG00000010557 I 0.827
ENSCSAG00000016229 Chlorocebus sabaeus ENSCSAG00000016229 I 0.827
ENSCSAG00000016338 Chlorocebus sabaeus ENSCSAG00000016338 I 0.855
ENSCHOG00000011132 Choloepus hoffmanni ENSCHOG00000011132 I 0.827
CLEC002956 Cimex lectularius CLEC002956 I 0.849
ENSCING00000007395 Ciona intestinalis ENSCING00000007395 D 0.829
csin109461 Clonorchis sinensis csin109461 I 0.817
CGI_10023919 Crassostrea gigas CGI_10023919 I 0.843
CpipJ_CPIJ004109 Culex pipiens CpipJ_CPIJ004109 I 0.862
CPIJ004109 Culex quinquefasciatus CPIJ004109 I 0.862
CGOC_0001018301 Cylicostephanus goldi CGOC_0001018301 I 0.600
KGM_11246 Danaus plexippus KGM_11246 I 0.858
nkx3.3 Danio rerio ENSDARG00000069327 I 0.841
nkx3-1 Danio rerio ENSDARG00000078280 I 0.832
nkx3.2 Danio rerio ENSDARG00000037639 I 0.855
NKX3-2 Dasypus novemcinctus ENSDNOG00000043074 I 0.855
NKX3-1 Dasypus novemcinctus ENSDNOG00000044451 I 0.827
YQE_10102 Dendroctonus ponderosae YQE_10102 I 0.833
GF18600 Drosophila ananassae FBgn0095618 I 0.867
GG24598 Drosophila erecta FBgn0116730 I 0.867
GH22032 Drosophila grimshawi FBgn0129493 I 0.855
GI21951 Drosophila mojavensis FBgn0144680 I 0.855
GL27337 Drosophila persimilis FBgn0164918 I 0.855
GA20672 Drosophila pseudoobscura FBgn0080666 I 0.855
bap Drosophila sechellia FBgn0067536 I 0.867
bap Drosophila simulans FBgn0067504 I 0.867
GJ14311 Drosophila virilis FBgn0201526 I 0.855
GK14503 Drosophila willistoni FBgn0216509 I 0.855
GE25732 Drosophila yakuba FBgn0242790 I 0.867
ECANG7_00763 Echinococcus canadensis ECANG7_00763 I 0.645
EmuJ_000895600 Echinococcus multilocularis EmuJ_000895600 I 0.645
NKX3-1 Echinops telfairi ENSETEG00000018790 I 0.827
NKX2-6 Equus caballus ENSECAG00000013714 I 0.605
ENSECAG00000001509 Equus caballus ENSECAG00000001509 I 0.827
ENSEEUG00000012691 Erinaceus europaeus ENSEEUG00000012691 I 0.855
NKX3-1 Erinaceus europaeus ENSEEUG00000001113 I 0.827
D915_02578 Fasciola hepatica D915_02578 I 0.692
ENSFALG00000011121 Ficedula albicollis ENSFALG00000011121 I 0.827
ENSGMOG00000018725 Gadus morhua ENSGMOG00000018725 I 0.855
ENSGMOG00000005518 Gadus morhua ENSGMOG00000005518 I 0.829
nkx3.2 Gasterosteus aculeatus ENSGACG00000016378 I 0.855
nkx3-1 Gasterosteus aculeatus ENSGACG00000010776 I 0.829
nkx3.3 Gasterosteus aculeatus ENSGACG00000007573 I 0.841
NKX3-1 Gorilla gorilla ENSGGOG00000014369 I 0.827
NKX3-2 Gorilla gorilla ENSGGOG00000008589 I 0.855
Hsal_06436--XP_001120208.1_APIME Harpegnathos saltator Hsal_06436--XP_001120208.1_APIME I 0.837
HMEL006181 Heliconius melpomene HMEL006181 I 0.858
HelroG148616 Helobdella robusta HelroG148616 I 0.848
HelroG138724 Helobdella robusta HelroG138724 I 0.667
NKX3-2 Homo sapiens ENSG00000109705 D 0.855
NKX3-1 Homo sapiens ENSG00000167034 D 0.827
TTAC_0000184701 Hydatigera taeniaeformis TTAC_0000184701 I 0.645
ENSSTOG00000021803 Ictidomys tridecemlineatus ENSSTOG00000021803 I 0.855
ISCW014989 Ixodes scapularis ISCW014989 I 0.833
ENSLACG00000003608 Latimeria chalumnae ENSLACG00000003608 I 0.855
ENSLACG00000012763 Latimeria chalumnae ENSLACG00000012763 I 0.841
ENSLOCG00000015015 Lepisosteus oculatus ENSLOCG00000015015 I 0.841
ENSLOCG00000009892 Lepisosteus oculatus ENSLOCG00000009892 I 0.855
ENSLOCG00000009031 Lepisosteus oculatus ENSLOCG00000009031 I 0.841
LDEC009723 Leptinotarsa decemlineata LDEC009723 I 0.833
nLs.2.1.2.g07743 Litomosoides sigmodontis nLs.2.1.2.g07743 I 0.619
LotgiG60615 Lottia gigantea LotgiG60615 I 0.828
NKX3-2 Loxodonta africana ENSLAFG00000031404 I 0.855
NKX3-1 Loxodonta africana ENSLAFG00000008941 I 0.827
LCUP000733 Lucilia cuprina LCUP000733 I 0.862
ENSP00000370253 Macaca fascicularis ENSP00000370253 I 0.827
ENSP00000371875 Macaca fascicularis ENSP00000371875 I 0.839
NKX3-1 Macaca mulatta ENSMMUG00000009796 I 0.827
ENSMMUG00000022026 Macaca mulatta ENSMMUG00000022026 I 0.855
MESCA006298 Megaselia scalaris MESCA006298 I 0.860
MCINX004875 Melitaea cinxia MCINX004875 I 0.858
Minc11316 Meloidogyne incognita Minc11316 I 0.606
MCOS_0000074801 Mesocestoides corti MCOS_0000074801 I 0.681
ENSMICG00000000190 Microcebus murinus ENSMICG00000000190 I 0.855
NKX3-1 Microcebus murinus ENSMICG00000011189 I 0.827
NKX3-1 Monodelphis domestica ENSMODG00000016789 I 0.827
NKX3-2 Monodelphis domestica ENSMODG00000024753 I 0.855
MDOA010758 Musca domestica MDOA010758 I 0.850
ENSMPUG00000000476 Mustela putorius furo ENSMPUG00000000476 I 0.855
ENSMPUG00000003418 Mustela putorius furo ENSMPUG00000003418 I 0.827
Nkx3-2 Mus musculus ENSMUSG00000049691 D 0.855
Nkx3-1 Mus musculus ENSMUSG00000022061 D 0.827
Myotis_brandtii_NKX3_10014306 Myotis brandtii Myotis_brandtii_NKX3_10014306 I 0.827
NKX3-1 Myotis lucifugus ENSMLUG00000006118 I 0.827
NKX3-2 Myotis lucifugus ENSMLUG00000008362 I 0.855
NV25828 Nasonia vitripennis NV25828 I 0.837
NEMVEDRAFT_v1g208034 Nematostella vectensis NEMVEDRAFT_v1g208034 I 0.838
ENSNLEG00000015968 Nomascus leucogenys ENSNLEG00000015968 I 0.827
ENSNLEG00000016256 Nomascus leucogenys ENSNLEG00000016256 I 0.855
ENSOPRG00000005452 Ochotona princeps ENSOPRG00000005452 I 0.855
NKX3-1 Ochotona princeps ENSOPRG00000003179 I 0.827
Ocbimv22026957m.g Octopus bimaculoides Ocbimv22026957m.g I 0.843
ENSONIG00000018347 Oreochromis niloticus ENSONIG00000018347 I 0.703
ENSONIG00000011762 Oreochromis niloticus ENSONIG00000011762 I 0.829
ENSONIG00000002379 Oreochromis niloticus ENSONIG00000002379 I 0.855
ENSONIG00000000279 Oreochromis niloticus ENSONIG00000000279 I 0.606
NKX3-1 Ornithorhynchus anatinus ENSOANG00000008027 I 0.827
NKX3-2 Oryctolagus cuniculus ENSOCUG00000009039 I 0.855
NKX3-1 Oryctolagus cuniculus ENSOCUG00000004294 I 0.827
nkx3-1 Oryzias latipes ENSORLG00000010925 I 0.841
nkx3.2 Oryzias latipes ENSORLG00000000593 I 0.855
ENSORLG00000007716 Oryzias latipes ENSORLG00000007716 I 0.841
NKX3-2 Otolemur garnettii ENSOGAG00000015615 I 0.855
NKX3-1 Otolemur garnettii ENSOGAG00000001303 I 0.827
ENSOARG00000010071 Ovis aries ENSOARG00000010071 I 0.827
ENSPTRG00000031253 Pan troglodytes ENSPTRG00000031253 I 0.855
NKX3-1 Pan troglodytes ENSPTRG00000020081 I 0.827
ENSPANG00000004934 Papio anubis ENSPANG00000004934 I 0.827
ENSPANG00000021310 Papio anubis ENSPANG00000021310 I 0.855
PHUM439840 Pediculus humanus PHUM439840 I 0.846
ENSPSIG00000012169 Pelodiscus sinensis ENSPSIG00000012169 I 0.855
ENSPSIG00000017342 Pelodiscus sinensis ENSPSIG00000017342 I 0.827
PPAI010327 Phlebotomus papatasi PPAI010327 I 0.862
ENSPFOG00000020885 Poecilia formosa ENSPFOG00000020885 I 0.841
ENSPFOG00000009440 Poecilia formosa ENSPFOG00000009440 I 0.606
ENSPFOG00000002882 Poecilia formosa ENSPFOG00000002882 I 0.855
ENSPFOG00000009654 Poecilia formosa ENSPFOG00000009654 I 0.829
Pvit_15821 Pogona vitticeps Pvit_15821 I 0.855
ENSPPYG00000014611 Pongo abelii ENSPPYG00000014611 I 0.855
ENSPPYG00000018442 Pongo abelii ENSPPYG00000018442 I 0.827
ENSPCAG00000016644 Procavia capensis ENSPCAG00000016644 I 0.827
NKX3-2 Procavia capensis ENSPCAG00000013077 I 0.855
PXEA_0003190801 Protopolystoma xenopodis PXEA_0003190801 I 0.807
NKX3-2 Pteropus vampyrus ENSPVAG00000002830 I 0.855
NKX2-6 Pteropus vampyrus ENSPVAG00000005380 I 0.605
NKX3-1 Pteropus vampyrus ENSPVAG00000005378 I 0.827
Nkx3-2 Rattus norvegicus ENSRNOG00000060782 I 0.855
Nkx3-1 Rattus norvegicus ENSRNOG00000015477 I 0.827
RPRC001122 Rhodnius prolixus RPRC001122 I 0.849
Sakowv30040088m.g Saccoglossus kowalevskii Sakowv30040088m.g I 0.843
ENSSHAG00000015475 Sarcophilus harrisii ENSSHAG00000015475 I 0.827
A_06201 Schistosoma haematobium A_06201 I 0.601
A_02450 Schistosoma haematobium A_02450 I 0.815
Smp_140730 Schistosoma mansoni Smp_140730 I 0.815
SMRZ_0000016501 Schistosoma margrebowiei SMRZ_0000016501 I 0.815
SMTD_0000549701 Schistosoma mattheei SMTD_0000549701 I 0.815
SMU15003549 Schmidtea mediterranea SMU15003549 I 0.821
SINV22315 Solenopsis invicta SINV22315 I 0.837
ENSSARG00000001895 Sorex araneus ENSSARG00000001895 I 0.827
L893_g18140 Steinernema glaseri L893_g18140 I 0.630
SMAR005030 Strigamia maritima SMAR005030 I 0.843
SPU_013047 Strongylocentrotus purpuratus SPU_013047 I 0.843
ENSSSCG00000028216 Sus scrofa ENSSSCG00000028216 I 0.827
ENSSSCG00000024594 Sus scrofa ENSSSCG00000024594 I 0.855
TASK_0000475201 Taenia asiatica TASK_0000475201 I 0.645
TsM_000540100 Taenia solium TsM_000540100 I 0.645
ENSTGUG00000004550 Taeniopygia guttata ENSTGUG00000004550 I 0.607
NKX2-3 Takifugu rubripes ENSTRUG00000002729 I 0.606
NKX2-3 Takifugu rubripes ENSTRUG00000003800 I 0.606
nkx3.2 Takifugu rubripes ENSTRUG00000014438 I 0.855
ENSTSYG00000007109 Tarsius syrichta ENSTSYG00000007109 I 0.827
tetur04g08350 Tetranychus urticae tetur04g08350 I 0.828
nkx3.2 Tetraodon nigroviridis ENSTNIG00000015732 I 0.845
TCLT_0000478201 Thelazia callipaeda TCLT_0000478201 I 0.733
TC012743 Tribolium castaneum TC012743 I 0.833
D917_04750 Trichinella nativa D917_04750 I 0.604
D918_06873 Trichuris suis D918_06873 I 0.627
TTRE_0000463801 Trichuris trichiura TTRE_0000463801 I 0.627
ENSTBEG00000002319 Tupaia belangeri ENSTBEG00000002319 I 0.827
ENSTTRG00000003623 Tursiops truncatus ENSTTRG00000003623 I 0.855
ENSTTRG00000012332 Tursiops truncatus ENSTTRG00000012332 I 0.689
NKX3-1 Vicugna pacos ENSVPAG00000004503 I 0.827
WUBG_10043 Wuchereria bancrofti WUBG_10043 I 0.605
nkx3-1.S Xenopus laevis XB-GENE-6252708 I 0.839
nkx3-2.S Xenopus laevis XB-GENE-876836 I 0.855
nkx3-1.L Xenopus laevis XB-GENE-479031 I 0.839
nkx3-3.S Xenopus laevis XB-GENE-865322 I 0.853
XP_002932598 Xenopus tropicalis XP_002932598 I 0.839
nkx3-2 Xenopus tropicalis XB-GENE-876834 I 0.855
nkx3-3 Xenopus tropicalis XB-GENE-479908 I 0.841
ENSXMAG00000020095 Xiphophorus maculatus ENSXMAG00000020095 I 0.841
ENSXMAG00000016282 Xiphophorus maculatus ENSXMAG00000016282 I 0.855
ENSXMAG00000005680 Xiphophorus maculatus ENSXMAG00000005680 I 0.606
ENSXMAG00000020262 Xiphophorus maculatus ENSXMAG00000020262 I 0.829