GH17639 (Drosophila grimshawi)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 FBgn0125109 T217782_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
exd
M06487_2.00
Drosophila melanogaster
YRTCAAAN

NTTTGAYR
B1H
Mathelier et al.(2014)
MA0222.1
0.867 1.000
exd
M06243_2.00
Drosophila melanogaster
YRTCAAAN

NTTTGAYR
B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611
0.867 1.000
exd
M06244_2.00
Drosophila melanogaster
NWRNWYNAAA

TTTNRWNYWN
B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611
0.867 1.000
exd
M06245_2.00
Drosophila melanogaster
NDTGAYRW

WYRTCAHN
B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611
0.867 1.000
exd
M06246_2.00
Drosophila melanogaster
NNDTGAYR

YRTCAHNN
B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611
0.867 1.000
Pbx1
M00513_2.00
Mus musculus
NNDKANNNN

NNNNTMHNN
PBM
Berger et al.(2008)
Pbx1_3203
0.822 0.947
PBX1
M05362_2.00
Homo sapiens
NTGATKGAYR

YRTCMATCAN
SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX
0.822 0.947
PBX1
M05364_2.00
Homo sapiens
DTGMTKGRYN

NRYCMAKCAH
SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX
0.822 0.947
PBX1
M02685_2.00
Homo sapiens
WWTGATTGATND

HNATCAATCAWW
SELEX
Mathelier et al.(2014)
MA0070.1
0.822 0.947
PBX2
M08134_2.00
Homo sapiens
NWGAKTGACABN

NVTGTCAMTCWN
ChIP-seq
Mathelier et al.(2014)
MA1113.1
0.822 0.947
PBX1
M09164_2.00
Homo sapiens
DGABTGRCRG

CYGYCAVTCH
Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A
0.822 0.947
PBX2
M09165_2.00
Homo sapiens
KRVHKTGATTGAWKN

NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C
0.822 0.947
Pbx2
M09199_2.00
Mus musculus
KRVHKTGATTGAWKN

NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C
0.822 0.947
PBX1
M09561_2.00
Homo sapiens
TGABTGACAGSC

GSCTGTCAVTCA
Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007
0.822 0.947
PBX1
M10748_2.00
Homo sapiens
WTKATTRDT

AHYAATMAW
Transfac
Matys et al.(2006)
V$PBX1_01
0.822 0.947
PBX1
M10749_2.00
Homo sapiens
DNHTTGATTGATKDB

VHMATCAATCAADNH
Transfac
Matys et al.(2006)
V$PBX1_02
0.822 0.947
PBX1
M10750_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_03
0.822 0.947
PBX1
M10751_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_05
0.822 0.947
PBX1
M10752_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_10
0.822 0.947
PBX1
M10753_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_Q3
0.822 0.947
PBX1
M05363_2.00
Homo sapiens
DTGAKKGAYG

CRTCMMTCAH
SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX
0.822 0.947
PBX1
M05365_2.00
Homo sapiens
MRTCAATCMH

DKGATTGAYK
SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX
0.822 0.947
pbx4
M02110_2.00
Tetraodon nigroviridis
TTGAYGDV

BHCRTCAA
PBM
Weirauch et al.(2014)
pTH6425
0.822 0.930
Pbx3
M09205_2.00
Mus musculus
BBBTGATTGRYNDN

NHNRYCAATCAVVV
Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A
0.820 0.947
PBX4
M00277_2.00
Homo sapiens
NNDDWHDNNN

NNNHDWHHNN
PBM
Barrera et al.(2016)
PBX4_REF
0.770 0.895
PBX4
M10649_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX4_01
0.770 0.895
CBG10835
M01243_2.00
Caenorhabditis briggsae
NNTKAYDNN

NNHRTMANN
PBM
Lambert et al.(2019)
pTH11444
0.646 0.544
PBX4
M00276_2.00
Homo sapiens
NYTAATTADNN

NNHTAATTARN
PBM
Barrera et al.(2016)
PBX4_R215Q
0.632 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0151545 Homeodomain 237 296

Links

Other Homeodomain family TFs
Other Drosophila grimshawi TFs

433 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA025964 Oryza indica BGIOSGA025964 N 0.000
POPTR_0016s02030 Populus trichocarpa POPTR_0016s02030 N 0.000
PRUPE_ppa005742mg Prunus persica PRUPE_ppa005742mg N 0.000
Si032551m.g Setaria italica Si032551m.g N 0.000
VIT_03s0017g01660 Vitis vinifera VIT_03s0017g01660 N 0.000
Pm014866 Prunus mume Pm014866 N 0.000
cassava29451.valid.m1 Manihot esculenta cassava29451.valid.m1 N 0.000
Eucgr.A00903 Eucalyptus grandis Eucgr.A00903 N 0.000
MDP0000269044 Malus domestica MDP0000269044 N 0.000
MDP0000287321 Malus domestica MDP0000287321 N 0.000
MDP0000289554 Malus domestica MDP0000289554 N 0.000
Pavir.Ba00637 Panicum virgatum Pavir.Ba00637 N 0.000
Pavir.Bb03100 Panicum virgatum Pavir.Bb03100 N 0.000
SapurV1A.0295s0450 Salix purpurea SapurV1A.0295s0450 N 0.000
POPTR_0006s02220 Populus trichocarpa POPTR_0006s02220 N 0.000
OS07G0567700 Oryza sativa OS07G0567700 N 0.000
BRADI1G24310 Brachypodium distachyon BRADI1G24310 N 0.000
GRMZM2G106548 Zea mays GRMZM2G106548 N 0.000
LPERR07G16410 Leersia perrieri LPERR07G16410 N 0.000
MLOC_62589 Hordeum vulgare MLOC_62589 N 0.000
OBART07G19080 Oryza barthii OBART07G19080 N 0.000
OGLUM07G18870 Oryza glumaepatula OGLUM07G18870 N 0.000
OLONG_002258 Oryza longistaminata OLONG_002258 N 0.000
OMERI07G15800 Oryza meridionalis OMERI07G15800 N 0.000
ONIVA07G17430 Oryza nivara ONIVA07G17430 N 0.000
OPUNC07G17970 Oryza punctata OPUNC07G17970 N 0.000
OPUNC07G18000 Oryza punctata OPUNC07G18000 N 0.000
ORGLA07G0244600 Oryza glaberrima ORGLA07G0244600 N 0.000
ORUFI07G19860 Oryza rufipogon ORUFI07G19860 N 0.000
chr3.CM0460.360.nd Lotus japonicus chr3.CM0460.360.nd N 0.000