CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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pdm3
(
Drosophila melanogaster
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00157 (Pou)
IPR000327
FBgn0261588
T218409_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
pdm3
M02127_2.00
Drosophila melanogaster
CTAATTAN
NTAATTAG
PBM
Weirauch et al.(2014)
pTH6769
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
POU6F1
M02094_2.00
Homo sapiens
VNTAATTANB
VNTAATTANB
PBM
Weirauch et al.(2014)
pTH6519
0.703
0.684
For this family, TFs with SR scores >
0.599
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02127_2.00
Homeodomain
1
57
RKRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALKN
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0292044
POU
813
902
IDLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSALAAQMYAAQLSTQQQNMFEKLDITPKSAQKIKPVLERWMKEAE
FBpp0292044
Homeodomain
928
984
RKRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALKN
FBpp0292045
POU
1110
1199
IDLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSALAAQMYAAQLSTQQQNMFEKLDITPKSAQKIKPVLERWMKEAE
FBpp0292045
Homeodomain
1225
1281
RKRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALKN
FBpp0308445
POU
1110
1181
IDLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICRFEKLDITPKSAQKIKPVLERWMKEAE
FBpp0308445
Homeodomain
1207
1263
RKRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALKN
FBpp0308446
Homeodomain
1226
1282
RKRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALKN
Links
Other
Homeodomain
family TFs
Other
Drosophila melanogaster
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy