GLYMA04G35850 (Glycine max)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 GLYMA04G35850 T218751_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
KNAT6
M02037_2.00
Arabidopsis thaliana
NNWGACNNNN

NNNNGTCWNN
PBM
Weirauch et al.(2014)
pTH7296
0.658 0.807
KNOX3_HORVU
M10790_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$KNOX3_01
0.640 0.807
GRMZM2G135447
M02139_2.00
Zea mays
DTGACRKS

SMYGTCAH
PBM
Weirauch et al.(2014)
pTH6328
0.609 0.754
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA04G35850.2 Homeodomain 200 259

Links

Other Homeodomain family TFs
Other Glycine max TFs

276 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GSMUA_Achr7G08050_001 Musa acuminata GSMUA_Achr7G08050_001 I 0.799
GSMUA_Achr6G04640_001 Musa acuminata GSMUA_Achr6G04640_001 I 0.795
Cla020277 Citrullus lanatus Cla020277 I 0.765
Cucsa.090630 Cucumis sativus Cucsa.090630 I 0.765
Cucsa.196810 Cucumis sativus Cucsa.196810 N 0.757
gene32207-v1.0-hybrid Fragaria vesca gene32207-v1.0-hybrid I 0.707
Ciclev10001779m.g Citrus clementina Ciclev10001779m.g I 0.666
Cla010234 Citrullus lanatus Cla010234 I 0.662
Bra024591 Brassica rapa Bra024591 I 0.662
Lus10029125.g Linum usitatissimum Lus10029125.g I 0.662
30147.m013923 Ricinus communis 30147.m013923 I 0.662
SapurV1A.0069s0110 Salix purpurea SapurV1A.0069s0110 I 0.662
Lus10030003.g Linum usitatissimum Lus10030003.g I 0.662
Ca_18152 Cicer arietinum Ca_18152 I 0.662
MTR_5g033720 Medicago truncatula MTR_5g033720 I 0.662
GLYMA01G03450 Glycine max GLYMA01G03450 I 0.662
LjSGA_010170.1 Lotus japonicus LjSGA_010170.1 I 0.662
29631.m001056 Ricinus communis 29631.m001056 I 0.662
cassava17642.valid.m1 Manihot esculenta cassava17642.valid.m1 I 0.662
AMTR_s00085p00165180 Amborella trichopoda AMTR_s00085p00165180 I 0.662
TCM_012104 Theobroma cacao TCM_012104 I 0.662
Aquca_002_00078 Aquilegia coerulea Aquca_002_00078 I 0.662
Bo5g039530 Brassica oleracea Bo5g039530 I 0.662
POPTR_0008s19290 Populus trichocarpa POPTR_0008s19290 I 0.662
GLYMA02G04190 Glycine max GLYMA02G04190 I 0.662
VIT_01s0127g00210 Vitis vinifera VIT_01s0127g00210 I 0.662
Sb02g002200 Sorghum bicolor Sb02g002200 I 0.661
Aquca_032_00056 Aquilegia coerulea Aquca_032_00056 I 0.661
MLOC_11678 Hordeum vulgare MLOC_11678 I 0.661
LPERR07G01870 Leersia perrieri LPERR07G01870 I 0.661
Si031454m.g Setaria italica Si031454m.g I 0.661
MTR_1g017080 Medicago truncatula MTR_1g017080 I 0.661
OBART07G01880 Oryza barthii OBART07G01880 I 0.661
Aquca_133_00021 Aquilegia coerulea Aquca_133_00021 I 0.661
MDP0000280307 Malus domestica MDP0000280307 I 0.661
OB07G11590 Oryza brachyantha OB07G11590 I 0.661
OLONG_012157 Oryza longistaminata OLONG_012157 I 0.661
Eucgr.F00106 Eucalyptus grandis Eucgr.F00106 I 0.661
Eucgr.H02544 Eucalyptus grandis Eucgr.H02544 I 0.661
OPUNC07G02410 Oryza punctata OPUNC07G02410 I 0.661
OSH15 Oryza sativa OS07G0129700 I 0.661
ORGLA07G0017300 Oryza glaberrima ORGLA07G0017300 I 0.661
ORUFI07G01770 Oryza rufipogon ORUFI07G01770 I 0.661
Ciclev10001508m.g Citrus clementina Ciclev10001508m.g I 0.661
POPTR_0002s11400 Populus trichocarpa POPTR_0002s11400 I 0.661
ONIVA07G00730 Oryza nivara ONIVA07G00730 I 0.661
OGLUM07G01740 Oryza glumaepatula OGLUM07G01740 I 0.661
Lus10007245.g Linum usitatissimum Lus10007245.g I 0.661
POPTR_0010s05340 Populus trichocarpa POPTR_0010s05340 I 0.661
Gorai.010G029000 Gossypium raimondii Gorai.010G029000 I 0.661
Gorai.009G223200 Gossypium raimondii Gorai.009G223200 I 0.661
OMERI07G01180 Oryza meridionalis OMERI07G01180 I 0.661
Lus10028244.g Linum usitatissimum Lus10028244.g I 0.661
Pavir.Ba03909 Panicum virgatum Pavir.Ba03909 I 0.661
Traes_2AL_E687AF1BE Triticum aestivum Traes_2AL_E687AF1BE I 0.661
Traes_2BL_921BF570C Triticum aestivum Traes_2BL_921BF570C I 0.661
OSH15 Oryza indica BGIOSGA025091 I 0.661
BRADI1G57607 Brachypodium distachyon BRADI1G57607 I 0.661
Cucsa.353140 Cucumis sativus Cucsa.353140 I 0.661
Traes_2DL_0D933D88B Triticum aestivum Traes_2DL_0D933D88B I 0.661
VIT_12s0059g01190 Vitis vinifera VIT_12s0059g01190 I 0.661
F775_14143 Aegilops tauschii F775_14143 I 0.661
Ca_09202 Cicer arietinum Ca_09202 I 0.661
cassava35932.valid.m1 Manihot esculenta cassava35932.valid.m1 I 0.661
Cla023003 Citrullus lanatus Cla023003 I 0.661
cassava22394.valid.m1 Manihot esculenta cassava22394.valid.m1 I 0.661
GRMZM2G028041 Zea mays GRMZM2G028041 I 0.661
SapurV1A.0004s0390 Salix purpurea SapurV1A.0004s0390 I 0.661
GSMUA_Achr10G28700_001 Musa acuminata GSMUA_Achr10G28700_001 I 0.661
30170.m013647 Ricinus communis 30170.m013647 I 0.661
Pavir.J30099 Panicum virgatum Pavir.J30099 I 0.661
mgf024741m Mimulus guttatus mgf024741m I 0.661
GSMUA_Achr2G13200_001 Musa acuminata GSMUA_Achr2G13200_001 I 0.661
Pavir.Bb00225 Panicum virgatum Pavir.Bb00225 I 0.661
GRMZM2G452178 Zea mays GRMZM2G452178 I 0.661
TCM_034627 Theobroma cacao TCM_034627 I 0.661
PDK_20s1334792g001 Phoenix dactylifera PDK_20s1334792g001 I 0.661
POPTR_0015s09040 Populus trichocarpa POPTR_0015s09040 I 0.659
Gorai.005G180500 Gossypium raimondii Gorai.005G180500 I 0.658
PK12151.1 Cannabis sativa PK12151.1 I 0.658
KNAT6 Arabidopsis thaliana AT1G23380 D 0.658
KNAT2 Arabidopsis thaliana AT1G70510 I 0.658
Pm028537 Prunus mume Pm028537 I 0.658
Bo2g068250 Brassica oleracea Bo2g068250 I 0.658
evm.TU.supercontig_69.81 Carica papaya evm.TU.supercontig_69.81 I 0.658
Carubv10011119m.g Capsella rubella Carubv10011119m.g I 0.658
Bra007920 Brassica rapa Bra007920 I 0.658
Thhalv10009009m.g Eutrema salsugineum Thhalv10009009m.g I 0.658
KNAT2 Arabidopsis lyrata fgenesh2_kg.2__1305__AT1G70510.1 I 0.658
Cagra.0605s0071 Capsella grandiflora Cagra.0605s0071 I 0.658
Thhalv10019501m.g Eutrema salsugineum Thhalv10019501m.g I 0.658
Bostr.12659s0199 Boechera stricta Bostr.12659s0199 I 0.658
TCM_010433 Theobroma cacao TCM_010433 I 0.658
KNAT6 Arabidopsis lyrata fgenesh2_kg.1__2553__AT1G23380.2 I 0.658
PRUPE_ppa019852mg Prunus persica PRUPE_ppa019852mg I 0.658
orange1.1g029411m.g Citrus sinensis orange1.1g029411m.g I 0.657
Ciclev10015818m.g Citrus clementina Ciclev10015818m.g I 0.657
orange1.1g038569m.g Citrus sinensis orange1.1g038569m.g I 0.657
LPERR03G27340 Leersia perrieri LPERR03G27340 I 0.657
PK26828.1 Cannabis sativa PK26828.1 I 0.657
Ciclev10022781m.g Citrus clementina Ciclev10022781m.g I 0.657
OB03G39780 Oryza brachyantha OB03G39780 I 0.657
Carubv10022064m.g Capsella rubella Carubv10022064m.g I 0.653
Cagra.1777s0019 Capsella grandiflora Cagra.1777s0019 I 0.653
orange1.1g045160m.g Citrus sinensis orange1.1g045160m.g I 0.650
Ciclev10033524m.g Citrus clementina Ciclev10033524m.g I 0.650
Gorai.005G098100 Gossypium raimondii Gorai.005G098100 I 0.649
Cla019493 Citrullus lanatus Cla019493 I 0.643
Gorai.009G336900 Gossypium raimondii Gorai.009G336900 I 0.641
Si037920m.g Setaria italica Si037920m.g I 0.640
GSMUA_Achr7G27540_001 Musa acuminata GSMUA_Achr7G27540_001 I 0.640
KNOX3_HORVU Hordeum vulgare KNOX3_HORVU D 0.640
Sb01g009480 Sorghum bicolor Sb01g009480 I 0.640
GSMUA_Achr4G28270_001 Musa acuminata GSMUA_Achr4G28270_001 I 0.640
GSMUA_Achr4G03120_001 Musa acuminata GSMUA_Achr4G03120_001 I 0.640
F775_31062 Aegilops tauschii F775_31062 I 0.640
GRMZM2G017087 Zea mays GRMZM2G017087 I 0.640
Pavir.Ia00733 Panicum virgatum Pavir.Ia00733 I 0.640
OLONG_001151 Oryza longistaminata OLONG_001151 I 0.640
Pavir.J00864 Panicum virgatum Pavir.J00864 I 0.640
gene03606-v1.0-hybrid Fragaria vesca gene03606-v1.0-hybrid I 0.639
MDP0000294096 Malus domestica MDP0000294096 I 0.639
MDP0000252095 Malus domestica MDP0000252095 I 0.639
Pm006717 Prunus mume Pm006717 I 0.639
Pm006718 Prunus mume Pm006718 I 0.639
PRUPE_ppa013871mg Prunus persica PRUPE_ppa013871mg I 0.639
Solyc05g005090.2 Solanum lycopersicum Solyc05g005090.2 I 0.636
PGSC0003DMG400013493 Solanum tuberosum PGSC0003DMG400013493 I 0.636
Bo8g073790 Brassica oleracea Bo8g073790 I 0.635
Bra016348 Brassica rapa Bra016348 I 0.635
VIT_17s0000g08710 Vitis vinifera VIT_17s0000g08710 I 0.630
POPTR_0012s08900 Populus trichocarpa POPTR_0012s08900 I 0.630
Lus10013037.g Linum usitatissimum Lus10013037.g I 0.630
MDP0000254187 Malus domestica MDP0000254187 I 0.630
KNAT1 Vitis vinifera VIT_18s0001g08380 I 0.629
KNAT1 Arabidopsis lyrata fgenesh2_kg.6__2861__AT4G08150.1 I 0.629
GLYMA14G10430 Glycine max GLYMA14G10430 I 0.629
GLYMA0041S00360 Glycine max GLYMA0041S00360 I 0.629
Bra000638 Brassica rapa Bra000638 I 0.629
KNAT1 Arabidopsis thaliana AT4G08150 I 0.629
PDK_20s1308201g001 Phoenix dactylifera PDK_20s1308201g001 I 0.629
Bo3g043050 Brassica oleracea Bo3g043050 I 0.629
Sb01g006790 Sorghum bicolor Sb01g006790 I 0.629
Cla021211 Citrullus lanatus Cla021211 I 0.629
Thhalv10028724m.g Eutrema salsugineum Thhalv10028724m.g I 0.629
GLYMA09G01000 Glycine max GLYMA09G01000 I 0.629
Carubv10002748m.g Capsella rubella Carubv10002748m.g I 0.629
Cucsa.395320 Cucumis sativus Cucsa.395320 I 0.629
Si039908m.g Setaria italica Si039908m.g I 0.629
Cagra.7524s0001 Capsella grandiflora Cagra.7524s0001 I 0.629
Pavir.J02443 Panicum virgatum Pavir.J02443 I 0.629
mgf017032m Mimulus guttatus mgf017032m I 0.629
Bostr.3877s0047 Boechera stricta Bostr.3877s0047 I 0.629
gene19507-v1.0-hybrid Fragaria vesca gene19507-v1.0-hybrid I 0.628
LjT03D14.220.nd Lotus japonicus LjT03D14.220.nd I 0.628
Cagra.0077s0011 Capsella grandiflora Cagra.0077s0011 I 0.628
Gorai.010G183800 Gossypium raimondii Gorai.010G183800 I 0.628
chr4.CM0288.890.nd Lotus japonicus chr4.CM0288.890.nd I 0.628
cassava27839.m1 Manihot esculenta cassava27839.m1 I 0.628
MDP0000136226 Malus domestica MDP0000136226 I 0.628
Gorai.011G011700 Gossypium raimondii Gorai.011G011700 I 0.628
Aquca_012_00046 Aquilegia coerulea Aquca_012_00046 I 0.628
Thhalv10023520m.g Eutrema salsugineum Thhalv10023520m.g I 0.628
Bostr.22157s0102 Boechera stricta Bostr.22157s0102 I 0.628
SapurV1A.0449s0300 Salix purpurea SapurV1A.0449s0300 I 0.628
mgf016504m Mimulus guttatus mgf016504m I 0.628
SapurV1A.0067s0070 Salix purpurea SapurV1A.0067s0070 I 0.628
SapurV1A.4388s0020 Salix purpurea SapurV1A.4388s0020 I 0.628
Cucsa.044950 Cucumis sativus Cucsa.044950 I 0.628
MDP0000231216 Malus domestica MDP0000231216 I 0.628
Eucgr.D01364 Eucalyptus grandis Eucgr.D01364 I 0.628
cassava7893.valid.m1 Manihot esculenta cassava7893.valid.m1 I 0.628
Carubv10022235m.g Capsella rubella Carubv10022235m.g I 0.628
PK16587.1 Cannabis sativa PK16587.1 I 0.628
Solyc02g081120.2 Solanum lycopersicum Solyc02g081120.2 I 0.628
GLYMA17G01370 Glycine max GLYMA17G01370 I 0.628
GLYMA07G39350 Glycine max GLYMA07G39350 I 0.628
TCM_030302 Theobroma cacao TCM_030302 I 0.628
STM Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000245 I 0.628
MTR_2g024390 Medicago truncatula MTR_2g024390 I 0.628
PRUPE_ppa008461mg Prunus persica PRUPE_ppa008461mg I 0.628
PGSC0003DMG400016711 Solanum tuberosum PGSC0003DMG400016711 I 0.628
POPTR_0004s00650 Populus trichocarpa POPTR_0004s00650 I 0.628
POPTR_0011s01590 Populus trichocarpa POPTR_0011s01590 I 0.628
Bra027050 Brassica rapa Bra027050 I 0.628
GLYMA15G11850 Glycine max GLYMA15G11850 I 0.628
Ca_00668 Cicer arietinum Ca_00668 I 0.628
Cla014651 Citrullus lanatus Cla014651 I 0.628
AMTR_s00123p00122830 Amborella trichopoda AMTR_s00123p00122830 I 0.628
Bo9g037420 Brassica oleracea Bo9g037420 I 0.628
STM Arabidopsis thaliana AT1G62360 I 0.628
29842.m003531 Ricinus communis 29842.m003531 I 0.628
Pm009705 Prunus mume Pm009705 I 0.628
STM Vitis vinifera VIT_10s0116g00190 I 0.628
cassava23924.valid.m1 Manihot esculenta cassava23924.valid.m1 I 0.626
GSMUA_Achr4G14600_001 Musa acuminata GSMUA_Achr4G14600_001 I 0.626
SELMODRAFT_448401 Selaginella moellendorffii SELMODRAFT_448401 I 0.625
SELMODRAFT_159366 Selaginella moellendorffii SELMODRAFT_159366 I 0.625
OLONG_001153 Oryza longistaminata OLONG_001153 I 0.624
ONIVA03G34220 Oryza nivara ONIVA03G34220 I 0.624
OPUNC03G29870 Oryza punctata OPUNC03G29870 I 0.624
evm.TU.supercontig_152.56 Carica papaya evm.TU.supercontig_152.56 I 0.624
OGLUM03G32350 Oryza glumaepatula OGLUM03G32350 I 0.624
BRADI1G12677 Brachypodium distachyon BRADI1G12677 I 0.624
Pavir.Ia00731 Panicum virgatum Pavir.Ia00731 I 0.624
Pavir.J02025 Panicum virgatum Pavir.J02025 I 0.624
ORGLA03G0296300 Oryza glaberrima ORGLA03G0296300 I 0.624
BGIOSGA009878 Oryza indica BGIOSGA009878 I 0.624
OBART03G32710 Oryza barthii OBART03G32710 I 0.624
OMERI03G29440 Oryza meridionalis OMERI03G29440 I 0.624
ORUFI03G34080 Oryza rufipogon ORUFI03G34080 I 0.624
TCM_026767 Theobroma cacao TCM_026767 I 0.622
GLYMA20G22986 Glycine max GLYMA20G22986 I 0.622
30128.m008910 Ricinus communis 30128.m008910 I 0.622
evm.TU.supercontig_48.162 Carica papaya evm.TU.supercontig_48.162 I 0.622
GLYMA10G28820 Glycine max GLYMA10G28820 I 0.622
VIT_14s0060g01180 Vitis vinifera VIT_14s0060g01180 I 0.622
SapurV1A.0127s0040 Salix purpurea SapurV1A.0127s0040 I 0.617
PDK_20s1688611g001 Phoenix dactylifera PDK_20s1688611g001 I 0.617
Pavir.Ia00428 Panicum virgatum Pavir.Ia00428 I 0.613
OMERI03G29420 Oryza meridionalis OMERI03G29420 I 0.609
OGLUM03G32330 Oryza glumaepatula OGLUM03G32330 I 0.609
OBART03G32690 Oryza barthii OBART03G32690 I 0.609
GRMZM2G135447 Zea mays GRMZM2G135447 D 0.609
ONIVA03G34200 Oryza nivara ONIVA03G34200 I 0.609
ORUFI03G34060 Oryza rufipogon ORUFI03G34060 I 0.609
ORGLA03G0296100 Oryza glaberrima ORGLA03G0296100 I 0.609
OPUNC03G29850 Oryza punctata OPUNC03G29850 I 0.609
GSMUA_Achr3G26230_001 Musa acuminata GSMUA_Achr3G26230_001 I 0.609
Ciclev10015581m.g Citrus clementina Ciclev10015581m.g I 0.608
orange1.1g024428m.g Citrus sinensis orange1.1g024428m.g I 0.608
GSMUA_Achr5G01960_001 Musa acuminata GSMUA_Achr5G01960_001 I 0.606
GRMZM5G832409 Zea mays GRMZM5G832409 I 0.603
Pavir.J06042 Panicum virgatum Pavir.J06042 I 0.603
GRMZM2G094241 Zea mays GRMZM2G094241 I 0.603
Si003268m.g Setaria italica Si003268m.g I 0.603
BRADI2G38390 Brachypodium distachyon BRADI2G38390 I 0.603
Traes_1DS_543CC7DC9 Triticum aestivum Traes_1DS_543CC7DC9 I 0.603
OSH71 Oryza indica BGIOSGA018883 I 0.603
TRIUR3_34593 Triticum urartu TRIUR3_34593 I 0.603
BGIOSGA003338 Oryza indica BGIOSGA003338 I 0.603
Traes_1BS_2156D66E1 Triticum aestivum Traes_1BS_2156D66E1 I 0.603
BRADI2G11540 Brachypodium distachyon BRADI2G11540 I 0.603
Traes_1AS_1B1587F7D Triticum aestivum Traes_1AS_1B1587F7D I 0.603
F775_31450 Aegilops tauschii F775_31450 I 0.603
Pavir.Eb01302 Panicum virgatum Pavir.Eb01302 I 0.603
Si023561m.g Setaria italica Si023561m.g I 0.603
LPERR01G11670 Leersia perrieri LPERR01G11670 I 0.603
OGLUM05G02160 Oryza glumaepatula OGLUM05G02160 I 0.603
ORUFI05G02190 Oryza rufipogon ORUFI05G02190 I 0.603
OSH6 Oryza sativa OS01G0302500 I 0.603
OGLUM01G14210 Oryza glumaepatula OGLUM01G14210 I 0.603
Pavir.Ea00998 Panicum virgatum Pavir.Ea00998 I 0.603
OMERI05G02200 Oryza meridionalis OMERI05G02200 I 0.603
ONIVA05G02030 Oryza nivara ONIVA05G02030 I 0.603
ORUFI01G13730 Oryza rufipogon ORUFI01G13730 I 0.603
ORGLA01G0097800 Oryza glaberrima ORGLA01G0097800 I 0.603
OPUNC05G01700 Oryza punctata OPUNC05G01700 I 0.603
OPUNC01G12460 Oryza punctata OPUNC01G12460 I 0.603
OSH71 Oryza sativa OS05G0129700 I 0.603
OBART05G02090 Oryza barthii OBART05G02090 I 0.603
OBART01G11630 Oryza barthii OBART01G11630 I 0.603
Sb09g002520 Sorghum bicolor Sb09g002520 I 0.603
Pavir.Ca00748 Panicum virgatum Pavir.Ca00748 I 0.603
LPERR05G01890 Leersia perrieri LPERR05G01890 I 0.603
ORGLA05G0020500 Oryza glaberrima ORGLA05G0020500 I 0.603
OB01G22470 Oryza brachyantha OB01G22470 I 0.603
Sb03g012480 Sorghum bicolor Sb03g012480 I 0.603
MLOC_57232 Hordeum vulgare MLOC_57232 I 0.603
SELMODRAFT_415291 Selaginella moellendorffii SELMODRAFT_415291 I 0.602
SELMODRAFT_451276 Selaginella moellendorffii SELMODRAFT_451276 I 0.602
Ca_03625 Cicer arietinum Ca_03625 I 0.601
ORGLA03G0270100 Oryza glaberrima ORGLA03G0270100 I 0.601
LjSGA_022785.1 Lotus japonicus LjSGA_022785.1 I 0.601
MTR_1g084060 Medicago truncatula MTR_1g084060 I 0.601
mgf000149m Mimulus guttatus mgf000149m I 0.600