CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA06G35050
(
Glycine max
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
GLYMA06G35050
T218773_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN
NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.742
0.632
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN
NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.742
0.632
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.722
0.596
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.722
0.596
ATHB-12
M00865_2.00
Arabidopsis thaliana
NNNNNNNN
NNNNNNNN
PBM
Franco-Zorrilla et al.(2014)
ATHB12
0.661
0.596
ATHB-12
M02045_2.00
Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV
PBM
Weirauch et al.(2014)
pTH7207
0.661
0.596
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.648
0.474
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN
NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.647
0.509
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.647
0.509
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.647
0.509
ATHB-5
M06932_2.00
Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_col_a
0.604
0.614
ATHB-5
M06933_2.00
Arabidopsis thaliana
NYAATMATTN
NAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a
0.604
0.614
ATHB-5
M02684_2.00
Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG
SELEX
Mathelier et al.(2014)
MA0110.2
0.604
0.614
ATHB-5
M10630_2.00
Arabidopsis thaliana
CAATVATTG
CAATBATTG
Transfac
Matys et al.(2006)
P$ATHB5_01
0.604
0.614
ATHB-13
M06900_2.00
Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB13_col_a
0.604
0.596
ATHB-13
M06901_2.00
Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN
Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a
0.604
0.596
Q39944_HELAN
M10802_2.00
Helianthus annuus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HAHB4_01
0.600
0.509
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA06G35050.1
Homeodomain
25
81
NNNKKRLTEDQVAILEKCFSSNMKLEPEQKFHLANQLGLPPRQVAIWYQNKRARWKT
Links
Other
Homeodomain
family TFs
Other
Glycine max
TFs
378 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy