CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA07G05800
(
Glycine max
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
GLYMA07G05800
T218781_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATHB-7
M02043_2.00
Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN
PBM
Weirauch et al.(2014)
pTH8090
0.745
0.912
ATHB-7
M06911_2.00
Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN
Dap-seq
OMalley et al.(2016)
ATHB7_col_a
0.745
0.912
ATHB-5
M06932_2.00
Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_col_a
0.613
0.614
ATHB-5
M06933_2.00
Arabidopsis thaliana
NYAATMATTN
NAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a
0.613
0.614
ATHB-5
M02684_2.00
Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG
SELEX
Mathelier et al.(2014)
MA0110.2
0.613
0.614
ATHB-5
M10630_2.00
Arabidopsis thaliana
CAATVATTG
CAATBATTG
Transfac
Matys et al.(2006)
P$ATHB5_01
0.613
0.614
ATHB-13
M06900_2.00
Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB13_col_a
0.601
0.614
ATHB-13
M06901_2.00
Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN
Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a
0.601
0.614
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA07G05800.1
Homeodomain
28
84
NNNTRRFSDEQIKSLETMFESESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKS
Links
Other
Homeodomain
family TFs
Other
Glycine max
TFs
307 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy