CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA08G39170
(
Glycine max
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
GLYMA08G39170
T218804_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
KNAT6
M02037_2.00
Arabidopsis thaliana
NNWGACNNNN
NNNNGTCWNN
PBM
Weirauch et al.(2014)
pTH7296
0.766
0.877
KNOX3_HORVU
M10790_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$KNOX3_01
0.760
0.807
GRMZM2G135447
M02139_2.00
Zea mays
DTGACRKS
SMYGTCAH
PBM
Weirauch et al.(2014)
pTH6328
0.717
0.772
PK25034.1
M01254_2.00
Cannabis sativa
NNTGACRKBN
NVMYGTCANN
PBM
Lambert et al.(2019)
pTH11259
0.709
0.789
GRMZM2G087741
M02138_2.00
Zea mays
NNTGACRKCN
NGMYGTCANN
PBM
Weirauch et al.(2014)
pTH5816
0.680
0.772
hth
M06490_2.00
Drosophila melanogaster
TGACAK
MTGTCA
B1H
Mathelier et al.(2014)
MA0227.1
0.606
0.474
hth
M06252_2.00
Drosophila melanogaster
TGTCA
TGACA
B1H
Zhu et al.(2011)
Hth_Cell_FBgn0001235
0.606
0.474
hth
M06253_2.00
Drosophila melanogaster
NNTGACAD
HTGTCANN
B1H
Zhu et al.(2011)
hth_SOLEXA_2_FBgn0001235
0.606
0.474
hth
M06254_2.00
Drosophila melanogaster
NTGACA
TGTCAN
B1H
Zhu et al.(2011)
Hth_SOLEXA_FBgn0001235
0.606
0.474
Meis1
M00407_2.00
Mus musculus
NTGACADNN
NNHTGTCAN
PBM
Berger et al.(2008)
Meis1_2335
0.606
0.456
Meis2
M00437_2.00
Mus musculus
NTGACANNN
NNNTGTCAN
PBM
Berger et al.(2008)
Mrg1_2246
0.606
0.456
Meis3
M00488_2.00
Mus musculus
NTGACANNN
NNNTGTCAN
PBM
Berger et al.(2008)
Mrg2_2302
0.606
0.456
MEIS1
M03165_2.00
Homo sapiens
NTGACAN
NTGTCAN
SELEX
Jolma et al.(2013)
MEIS1_1
0.606
0.456
MEIS2
M03147_2.00
Homo sapiens
WTGACAGSTGTCAM
KTGACASCTGTCAW
SELEX
Jolma et al.(2013)
MEIS2_1
0.606
0.456
MEIS2
M03148_2.00
Homo sapiens
DTGACAGS
SCTGTCAH
SELEX
Jolma et al.(2013)
MEIS2_2
0.606
0.456
Meis2
M03261_2.00
Mus musculus
NTGACAN
NTGTCAN
SELEX
Jolma et al.(2013)
Meis2_1
0.606
0.456
Meis2
M03262_2.00
Mus musculus
TGACAGSTGTCA
TGACASCTGTCA
SELEX
Jolma et al.(2013)
Meis2_2
0.606
0.456
Meis3
M03279_2.00
Mus musculus
NTGACAN
NTGTCAN
SELEX
Jolma et al.(2013)
Meis3_1
0.606
0.456
Meis3
M03280_2.00
Mus musculus
TGACAGSTGTCA
TGACASCTGTCA
SELEX
Jolma et al.(2013)
Meis3_2
0.606
0.456
MEIS2
M02740_2.00
Homo sapiens
TGACASSTGTC
GACASSTGTCA
SELEX
Jolma et al.(2010)
MEIS2_dimer
0.606
0.456
MEIS2
M02741_2.00
Homo sapiens
GGACAKNT
ANMTGTCC
SELEX
Jolma et al.(2010)
MEIS2_monomer
0.606
0.456
MEIS2
M05138_2.00
Homo sapiens
TGACASSTGTCA
TGACASSTGTCA
SELEX
Yin et al.(2017)
MEIS2_eDBD_HT-SELEX
0.606
0.456
MEIS2
M05140_2.00
Homo sapiens
TGACASSTGTCA
TGACASSTGTCA
SELEX
Yin et al.(2017)
MEIS2_FL_HT-SELEX
0.606
0.456
MEIS1
M09148_2.00
Homo sapiens
NTGATTDATDDB
VHHATHAATCAN
Misc
Kulakovskiy et al.(2013)
MEIS1_HUMAN.H11MO.0.A
0.606
0.456
MEIS2
M09143_2.00
Homo sapiens
HTGACAGBTKTBM
KVAMAVCTGTCAD
Misc
Kulakovskiy et al.(2013)
MEIS2_HUMAN.H11MO.0.B
0.606
0.456
Meis1
M09178_2.00
Mus musculus
NTGATTDATDDB
VHHATHAATCAN
Misc
Kulakovskiy et al.(2013)
MEIS1_MOUSE.H11MO.0.A
0.606
0.456
Meis2
M09189_2.00
Mus musculus
HTGACAGBTKTBM
KVAMAVCTGTCAD
Misc
Kulakovskiy et al.(2013)
MEIS2_MOUSE.H11MO.0.B
0.606
0.456
Meis1
M09568_2.00
Mus musculus
VBTGWCASNN
NNSTGWCAVB
Misc
Heinz et al.(2010)
MastCells-Meis1_GSE48085
0.606
0.456
MEIS1
M10709_2.00
Homo sapiens
NHNTGACAGNDN
NHNCTGTCANDN
Transfac
Matys et al.(2006)
V$MEIS1_01
0.606
0.456
MEIS1
M10710_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEIS1_06
0.606
0.456
MEIS2
M05139_2.00
Homo sapiens
YGACASSYGHCR
YGDCRSSTGTCR
SELEX
Yin et al.(2017)
MEIS2_eDBD_Methyl-HT-SELEX
0.606
0.456
MEIS2
M05141_2.00
Homo sapiens
TGACASSTGTCA
TGACASSTGTCA
SELEX
Yin et al.(2017)
MEIS2_FL_Methyl-HT-SELEX
0.606
0.456
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA08G39170.1
Homeodomain
241
300
KKKRGKLPKDARQTLLQWWNIHYKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRHWK
Links
Other
Homeodomain
family TFs
Other
Glycine max
TFs
547 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy