GLYMA12G18720 (Glycine max)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 GLYMA12G18720 T218851_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.669 0.607
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.669 0.607
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.669 0.589
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.669 0.589
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.640 0.589
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.640 0.589
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA12G18720.1 Homeodomain 26 81

Links

Other Homeodomain family TFs
Other Glycine max TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.739
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.739
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.729
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.714
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.702
TCM_031644 Theobroma cacao TCM_031644 I 0.702
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.702
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.694
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.694
Pm011328 Prunus mume Pm011328 I 0.686
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.686
MDP0000146339 Malus domestica MDP0000146339 I 0.685
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.682
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.678
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.678
MDP0000909160 Malus domestica MDP0000909160 I 0.677
mgf013301m Mimulus guttatus mgf013301m I 0.672
MDP0000316497 Malus domestica MDP0000316497 I 0.671
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.669
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.669
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.669
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.669
Pm015861 Prunus mume Pm015861 I 0.669
Cla010510 Citrullus lanatus Cla010510 I 0.669
TCM_018470 Theobroma cacao TCM_018470 I 0.669
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.669
29822.m003500 Ricinus communis 29822.m003500 I 0.669
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.669
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.669
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.669
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.669
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.669
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.669
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.669
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.669
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.669
PK20392.1 Cannabis sativa PK20392.1 D 0.669
MDP0000737128 Malus domestica MDP0000737128 I 0.669
MDP0000124827 Malus domestica MDP0000124827 I 0.669
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.669
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.669
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.669
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.669
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.669
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.669
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.669
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.669
Ca_10527 Cicer arietinum Ca_10527 I 0.669
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.669
Bra039135 Brassica rapa Bra039135 I 0.669
Bra023506 Brassica rapa Bra023506 I 0.669
Bra008717 Brassica rapa Bra008717 I 0.669
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.669
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.669
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.669
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.669
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.669
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.669
Bra006285 Brassica rapa Bra006285 I 0.669
HAT7 Arabidopsis thaliana AT5G15150 I 0.669
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.669
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.669
Bo1g158730 Brassica oleracea Bo1g158730 I 0.669
Bo2g012410 Brassica oleracea Bo2g012410 I 0.669
Bo3g010120 Brassica oleracea Bo3g010120 I 0.669
Bo9g165360 Brassica oleracea Bo9g165360 I 0.669
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.669
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.669
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.667
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.667
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.666
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.665
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.665
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.664
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.662
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.662
evm.TU.supercontig_83.103 Carica papaya evm.TU.supercontig_83.103 N 0.660
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.660
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.658
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.654
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.652
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.647
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.647
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.640
Bra007637 Brassica rapa Bra007637 I 0.640
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.640
Bo8g097390 Brassica oleracea Bo8g097390 I 0.640
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.636
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.636
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.636
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.635
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.635
Bo12274s010 Brassica oleracea Bo12274s010 I 0.633
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.630
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.628
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.628
Bo2g042250 Brassica oleracea Bo2g042250 I 0.624
Bra022687 Brassica rapa Bra022687 I 0.624
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.624
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.624
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.623
Bra014417 Brassica rapa Bra014417 I 0.622
Bo4g100070 Brassica oleracea Bo4g100070 I 0.622
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.620
mgf025174m Mimulus guttatus mgf025174m I 0.619
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.619
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.618
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.608
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.608
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.608
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.599