GRMZM2G011588 (Zea mays)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 GRMZM2G011588 T218952_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATH1
M10627_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATH1_01
0.842 0.735
Q5EVH4_OIKDI
M02227_2.00
Oikopleura dioica
NTGACAKN

NMTGTCAN
PBM
Weirauch et al.(2014)
pTH6041
0.624 0.531
MEIS3
M03093_2.00
Homo sapiens
DTGACANN

NNTGTCAH
SELEX
Jolma et al.(2013)
MEIS3_1
0.600 0.388
MEIS3
M03094_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
MEIS3_2
0.600 0.388
MEIS3
M04951_2.00
Homo sapiens
TGWCABVTGWCA

TGWCABVTGWCA
SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX
0.600 0.388
MEIS3
M04952_2.00
Homo sapiens
YGWCABVTGWCR

YGWCABVTGWCR
SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX
0.600 0.388
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G011588_P01 Homeodomain 391 442
GRMZM2G011588_P03 Homeodomain 391 442

Links

Other Homeodomain family TFs
Other Zea mays TFs

1012 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_33214 Aegilops tauschii F775_33214 N 0.000
F775_32059 Aegilops tauschii F775_32059 I 0.000
Aquca_007_00377 Aquilegia coerulea Aquca_007_00377 N 0.000
Aquca_006_00159 Aquilegia coerulea Aquca_006_00159 I 0.000
Al_scaffold_0007_76 Arabidopsis lyrata Al_scaffold_0007_76 I 0.000
scaffold_100594.1 Arabidopsis lyrata scaffold_100594.1 I 0.000
AT4G38900 Arabidopsis thaliana AT4G38900 I 0.000
Bostr.25219s0353 Boechera stricta Bostr.25219s0353 I 0.000
Bostr.25542s0069 Boechera stricta Bostr.25542s0069 I 0.000
BRADI5G14497 Brachypodium distachyon BRADI5G14497 I 0.000
BRADI3G41980 Brachypodium distachyon BRADI3G41980 I 0.000
BRADI3G31890 Brachypodium distachyon BRADI3G31890 N 0.000
BRADI1G76690 Brachypodium distachyon BRADI1G76690 N 0.000
Bo8g005940 Brassica oleracea Bo8g005940 I 0.000
Bo7g119550 Brassica oleracea Bo7g119550 I 0.000
Bo5g007170 Brassica oleracea Bo5g007170 I 0.000
Bo3g149620 Brassica oleracea Bo3g149620 I 0.000
Bra033582 Brassica rapa Bra033582 I 0.000
Bra030637 Brassica rapa Bra030637 I 0.000
Bra015471 Brassica rapa Bra015471 I 0.000
Bra010722 Brassica rapa Bra010722 I 0.000
PK20942.1 Cannabis sativa PK20942.1 D 0.000
PK00843.1 Cannabis sativa PK00843.1 I 0.000
Cagra.1383s0070 Capsella grandiflora Cagra.1383s0070 N 0.000
Cagra.1671s0236 Capsella grandiflora Cagra.1671s0236 I 0.000
Carubv10008993m.g Capsella rubella Carubv10008993m.g I 0.000
Carubv10004500m.g Capsella rubella Carubv10004500m.g N 0.000
evm.TU.supercontig_150.7 Carica papaya evm.TU.supercontig_150.7 I 0.000
evm.TU.supercontig_81.160 Carica papaya evm.TU.supercontig_81.160 I 0.000
Ca_10755 Cicer arietinum Ca_10755 N 0.000
Ca_27693 Cicer arietinum Ca_27693 I 0.000
Ca_02692 Cicer arietinum Ca_02692 I 0.000
Cla016124 Citrullus lanatus Cla016124 I 0.000
Cla016125 Citrullus lanatus Cla016125 I 0.000
Ciclev10028062m.g Citrus clementina Ciclev10028062m.g I 0.000
orange1.1g007579m.g Citrus sinensis orange1.1g007579m.g I 0.000
orange1.1g014471m.g Citrus sinensis orange1.1g014471m.g N 0.000
Cucsa.062530 Cucumis sativus Cucsa.062530 I 0.000
Cucsa.382190 Cucumis sativus Cucsa.382190 I 0.000
Cucsa.382180 Cucumis sativus Cucsa.382180 I 0.000
Cucsa.251880 Cucumis sativus Cucsa.251880 I 0.000
Eucgr.I01335 Eucalyptus grandis Eucgr.I01335 I 0.000
Eucgr.D00737 Eucalyptus grandis Eucgr.D00737 I 0.000
Thhalv10007692m.g Eutrema salsugineum Thhalv10007692m.g I 0.000
Thhalv10024895m.g Eutrema salsugineum Thhalv10024895m.g I 0.000
gene23487-v1.0-hybrid Fragaria vesca gene23487-v1.0-hybrid I 0.000
gene01680-v1.0-hybrid Fragaria vesca gene01680-v1.0-hybrid I 0.000
GLYMA04G02850 Glycine max GLYMA04G02850 I 0.000
GLYMA11G11791 Glycine max GLYMA11G11791 I 0.000
GLYMA11G13510 Glycine max GLYMA11G13510 I 0.000
GLYMA12G04050 Glycine max GLYMA12G04050 I 0.000
GLYMA12G05520 Glycine max GLYMA12G05520 I 0.000
GLYMA13G42030 Glycine max GLYMA13G42030 I 0.000
GLYMA15G03350 Glycine max GLYMA15G03350 I 0.000
Gorai.001G243800 Gossypium raimondii Gorai.001G243800 I 0.000
Gorai.011G140400 Gossypium raimondii Gorai.011G140400 I 0.000
Gorai.005G248900 Gossypium raimondii Gorai.005G248900 I 0.000
Gorai.005G015900 Gossypium raimondii Gorai.005G015900 I 0.000
Gorai.006G229500 Gossypium raimondii Gorai.006G229500 I 0.000
MLOC_66865 Hordeum vulgare MLOC_66865 N 0.000
MLOC_64781 Hordeum vulgare MLOC_64781 I 0.000
MLOC_64362 Hordeum vulgare MLOC_64362 I 0.000
MLOC_10725 Hordeum vulgare MLOC_10725 N 0.000
MLOC_75510 Hordeum vulgare MLOC_75510 I 0.000
LPERR10G12670 Leersia perrieri LPERR10G12670 N 0.000
LPERR04G13880 Leersia perrieri LPERR04G13880 N 0.000
LPERR03G02000 Leersia perrieri LPERR03G02000 N 0.000
Lus10012391.g Linum usitatissimum Lus10012391.g N 0.000
Lus10042057.g Linum usitatissimum Lus10042057.g I 0.000
Lus10018061.g Linum usitatissimum Lus10018061.g I 0.000
Lus10019376.g Linum usitatissimum Lus10019376.g I 0.000
chr3.CM0106.340.nd Lotus japonicus chr3.CM0106.340.nd I 0.000
cassava38273.valid.m1 Manihot esculenta cassava38273.valid.m1 I 0.000
cassava30160.valid.m1 Manihot esculenta cassava30160.valid.m1 I 0.000
cassava32399.m1 Manihot esculenta cassava32399.m1 I 0.000
cassava43164.valid.m1 Manihot esculenta cassava43164.valid.m1 I 0.000
MTR_4g072090 Medicago truncatula MTR_4g072090 I 0.000
MTR_1g023690 Medicago truncatula MTR_1g023690 N 0.000
mgf000302m Mimulus guttatus mgf000302m I 0.000
mgf004912m Mimulus guttatus mgf004912m I 0.000
GSMUA_Achr1G08090_001 Musa acuminata GSMUA_Achr1G08090_001 N 0.000
GSMUA_Achr5G20200_001 Musa acuminata GSMUA_Achr5G20200_001 N 0.000
GSMUA_Achr11G14990_001 Musa acuminata GSMUA_Achr11G14990_001 I 0.000
GSMUA_Achr5G25700_001 Musa acuminata GSMUA_Achr5G25700_001 I 0.000
GSMUA_Achr8G12090_001 Musa acuminata GSMUA_Achr8G12090_001 I 0.000
GSMUA_AchrUn_randomG00680_001 Musa acuminata GSMUA_AchrUn_randomG00680_001 I 0.000
GSMUA_Achr3G12290_001 Musa acuminata GSMUA_Achr3G12290_001 I 0.000
OBART03G02190 Oryza barthii OBART03G02190 N 0.000
OB03G12130 Oryza brachyantha OB03G12130 N 0.000
OB09G23080 Oryza brachyantha OB09G23080 I 0.000
OB10G23730 Oryza brachyantha OB10G23730 N 0.000
ORGLA03G0019600 Oryza glaberrima ORGLA03G0019600 N 0.000
OGLUM09G17020 Oryza glumaepatula OGLUM09G17020 I 0.000
OGLUM03G02140 Oryza glumaepatula OGLUM03G02140 N 0.000
BGIOSGA029105 Oryza indica BGIOSGA029105 I 0.000
BGIOSGA011761 Oryza indica BGIOSGA011761 N 0.000
BGIOSGA029106 Oryza indica BGIOSGA029106 I 0.000
OLONG_016151 Oryza longistaminata OLONG_016151 N 0.000
OLONG_011520 Oryza longistaminata OLONG_011520 N 0.000
OMERI03G02030 Oryza meridionalis OMERI03G02030 N 0.000
OMERI09G12160 Oryza meridionalis OMERI09G12160 I 0.000
ONIVA03G01800 Oryza nivara ONIVA03G01800 N 0.000
OPUNC03G01930 Oryza punctata OPUNC03G01930 N 0.000
OPUNC10G15060 Oryza punctata OPUNC10G15060 N 0.000
ORUFI03G01930 Oryza rufipogon ORUFI03G01930 N 0.000
OS03G0127500 Oryza sativa OS03G0127500 N 0.000
RF2A Oryza sativa OS09G0516200 I 0.000
OS10G0531900 Oryza sativa OS10G0531900 N 0.000
Pavir.J29906 Panicum virgatum Pavir.J29906 N 0.000
Pavir.J22781 Panicum virgatum Pavir.J22781 N 0.000
Pavir.Ib00162 Panicum virgatum Pavir.Ib00162 N 0.000
Pavir.Ia02926 Panicum virgatum Pavir.Ia02926 N 0.000
Pavir.J19159 Panicum virgatum Pavir.J19159 N 0.000
PDK_20s1312701g003 Phoenix dactylifera PDK_20s1312701g003 I 0.000
gw1.20.225.1 Physcomitrella patens gw1.20.225.1 I 0.000
e_gw1.20.99.1 Physcomitrella patens e_gw1.20.99.1 I 0.000
estExt_gwp_gw1.C_200078 Physcomitrella patens estExt_gwp_gw1.C_200078 I 0.000
estExt_gwp_gw1.C_5120003 Physcomitrella patens estExt_gwp_gw1.C_5120003 I 0.000
fgenesh1_pg.scaffold_3000202 Physcomitrella patens fgenesh1_pg.scaffold_3000202 N 0.000
POPTR_0004s17080 Populus trichocarpa POPTR_0004s17080 I 0.000
POPTR_0017s05610 Populus trichocarpa POPTR_0017s05610 I 0.000
POPTR_0009s12830 Populus trichocarpa POPTR_0009s12830 I 0.000
30131.m007145 Ricinus communis 30131.m007145 N 0.000
SapurV1A.0379s0290 Salix purpurea SapurV1A.0379s0290 I 0.000
SELMODRAFT_34663 Selaginella moellendorffii SELMODRAFT_34663 I 0.000
SELMODRAFT_77868 Selaginella moellendorffii SELMODRAFT_77868 I 0.000
SELMODRAFT_129846 Selaginella moellendorffii SELMODRAFT_129846 I 0.000
Si015587m.g Setaria italica Si015587m.g I 0.000
Si035841m.g Setaria italica Si035841m.g N 0.000
Si039566m.g Setaria italica Si039566m.g N 0.000
Solyc01g110480.2 Solanum lycopersicum Solyc01g110480.2 I 0.000
Solyc06g053350.2 Solanum lycopersicum Solyc06g053350.2 I 0.000
PGSC0003DMG400001659 Solanum tuberosum PGSC0003DMG400001659 I 0.000
Sb06g021350 Sorghum bicolor Sb06g021350 I 0.000
Sb01g030770 Sorghum bicolor Sb01g030770 N 0.000
Sb01g048710 Sorghum bicolor Sb01g048710 N 0.000
Sb07g025490 Sorghum bicolor Sb07g025490 I 0.000
TCM_006766 Theobroma cacao TCM_006766 I 0.000
TCM_019998 Theobroma cacao TCM_019998 I 0.000
TCM_034172 Theobroma cacao TCM_034172 N 0.000
Traes_2AL_FA1957F59 Triticum aestivum Traes_2AL_FA1957F59 I 0.000
Traes_7DS_3463CAE33 Triticum aestivum Traes_7DS_3463CAE33 I 0.000
Traes_7BS_7B68879A9 Triticum aestivum Traes_7BS_7B68879A9 I 0.000
Traes_1AL_2AC682D6D Triticum aestivum Traes_1AL_2AC682D6D N 0.000
TRIUR3_31242 Triticum urartu TRIUR3_31242 I 0.000
TRIUR3_20880 Triticum urartu TRIUR3_20880 N 0.000
TRIUR3_23538 Triticum urartu TRIUR3_23538 N 0.000
TRIUR3_15472 Triticum urartu TRIUR3_15472 N 0.000
VIT_05s0102g01120 Vitis vinifera VIT_05s0102g01120 I 0.000
VIT_03s0038g00860 Vitis vinifera VIT_03s0038g00860 I 0.000
GRMZM2G332294 Zea mays GRMZM2G332294 I 0.000
GRMZM2G428184 Zea mays GRMZM2G428184 N 0.000
GRMZM2G473274 Zea mays GRMZM2G473274 N 0.000
GRMZM2G353553 Zea mays GRMZM2G353553 N 0.000