GRMZM2G135447 (Zea mays)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 GRMZM2G135447 T219019_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GRMZM2G135447
M02139_2.00		 Zea mays
DTGACRKS
SMYGTCAH		 PBM
Weirauch et al.(2014)
pTH6328		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNOX3_HORVU
M10790_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$KNOX3_01 		0.803 0.860
KNAT6
M02037_2.00 		Arabidopsis thaliana
NNWGACNNNN
NNNNGTCWNN		 PBM
Weirauch et al.(2014)
pTH7296 		0.798 0.789
GRMZM2G087741
M02138_2.00 		Zea mays
NNTGACRKCN
NGMYGTCANN		 PBM
Weirauch et al.(2014)
pTH5816 		0.784 0.737
PK25034.1
M01254_2.00 		Cannabis sativa
NNTGACRKBN
NVMYGTCANN		 PBM
Lambert et al.(2019)
pTH11259 		0.677 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02139_2.00 Homeodomain 1 60

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G135447_P01 Homeodomain 260 319

Links

Other Homeodomain family TFs
Other Zea mays TFs

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301 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action