M408DRAFT_332781 (Serendipita vermifera)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 M408DRAFT_332781 T220338_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.656 0.464
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.656 0.464
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.636 0.429
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.636 0.429
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.603 0.375
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KIM22736 Homeodomain 148 205

Links

Other Homeodomain family TFs
Other Serendipita vermifera TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.656
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.656
Bra039135 Brassica rapa Bra039135 I 0.656
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.656
Bo1g158730 Brassica oleracea Bo1g158730 I 0.656
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.656
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.656
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.656
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.641
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.637
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.637
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.637
Pm015861 Prunus mume Pm015861 I 0.636
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.636
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.636
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.636
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.636
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.636
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.636
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.636
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.636
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.636
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.636
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.636
PK20392.1 Cannabis sativa PK20392.1 D 0.636
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.636
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.636
MDP0000737128 Malus domestica MDP0000737128 I 0.636
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.636
Cla010510 Citrullus lanatus Cla010510 I 0.636
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.636
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.636
MDP0000124827 Malus domestica MDP0000124827 I 0.636
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.636
29822.m003500 Ricinus communis 29822.m003500 I 0.636
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.636
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.636
Ca_10527 Cicer arietinum Ca_10527 I 0.636
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.636
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.636
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.636
Bra023506 Brassica rapa Bra023506 I 0.636
Bra008717 Brassica rapa Bra008717 I 0.636
Bo2g012410 Brassica oleracea Bo2g012410 I 0.636
HAT7 Arabidopsis thaliana AT5G15150 I 0.636
Bo3g010120 Brassica oleracea Bo3g010120 I 0.636
Bo9g165360 Brassica oleracea Bo9g165360 I 0.636
Bra006285 Brassica rapa Bra006285 I 0.636
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.636
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.636
TCM_018470 Theobroma cacao TCM_018470 I 0.636
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.636
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.636
Bo12274s010 Brassica oleracea Bo12274s010 I 0.635
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.631
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.631
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.626
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.618
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.614
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.614
Bra022687 Brassica rapa Bra022687 I 0.611
Bo2g042250 Brassica oleracea Bo2g042250 I 0.611
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.606
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.606
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.606
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.606
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.606
Cla018641 Citrullus lanatus Cla018641 I 0.604
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.604
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.604
mgf022748m Mimulus guttatus mgf022748m I 0.604
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.604
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.604
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.604
Cla018017 Citrullus lanatus Cla018017 I 0.603
mgf019824m Mimulus guttatus mgf019824m I 0.603
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.603
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.603
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.603
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.600