MCINX000309 (Melitaea cinxia)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 MCINX000309 T220454_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Lim3
M02116_2.00
Drosophila melanogaster
NNNNNATBRN

NYVATNNNNN
PBM
Weirauch et al.(2014)
pTH6478
0.689 0.904
Lim3
M03796_2.00
Drosophila melanogaster
BTAATTAV

BTAATTAV
SELEX
Nitta et al.(2015)
Lim3_1
0.689 0.904
Lim3
M06492_2.00
Drosophila melanogaster
HTAATKA

TMATTAD
B1H
Mathelier et al.(2014)
MA0195.1
0.689 0.904
Lim3
M06258_2.00
Drosophila melanogaster
HHTAATKA

TMATTADD
B1H
Zhu et al.(2011)
Lim3_Cell_FBgn0002023
0.689 0.904
Lim3
M06259_2.00
Drosophila melanogaster
HTRATTR

YAATYAD
B1H
Zhu et al.(2011)
Lim3_SOLEXA_FBgn0002023
0.689 0.904
Lhx3
M00435_2.00
Mus musculus
NNNYAATHW

WDATTRNNN
PBM
Berger et al.(2008)
Lhx3_3431
0.677 0.885
Lhx3
M02687_2.00
Mus musculus
VRWTAATTAATTW

WAATTAATTAWYB
SELEX
Mathelier et al.(2014)
MA0135.1
0.677 0.885
LHX3
M09137_2.00
Homo sapiens
NYTAATTAAWTHH

DDAWTTAATTARN
Misc
Kulakovskiy et al.(2013)
LHX3_HUMAN.H11MO.0.C
0.677 0.885
Lhx3
M09188_2.00
Mus musculus
NYTRATKRV

BYMATYARN
Misc
Kulakovskiy et al.(2013)
LHX3_MOUSE.H11MO.0.C
0.677 0.885
Lhx3
M09570_2.00
Mus musculus
NNBTAATTAV

BTAATTAVNN
Misc
Heinz et al.(2010)
Neuron-Lhx3_GSE31456
0.677 0.885
LHX3
M10657_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX3A_01
0.677 0.885
LHX3
M10658_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX3b_01
0.677 0.885
LHX3
M10659_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX3_Q3
0.677 0.885
Lhx4
M00430_2.00
Mus musculus
NYAATHN

NDATTRN
PBM
Berger et al.(2008)
Lhx4_1719
0.677 0.865
Lhx4
M03257_2.00
Mus musculus
BTAATTRN

NYAATTAV
SELEX
Jolma et al.(2013)
Lhx4_1
0.677 0.865
LHX4
M05063_2.00
Homo sapiens
BYAATYRV

BYRATTRV
SELEX
Yin et al.(2017)
LHX4_eDBD_HT-SELEX
0.677 0.865
LHX4
M05066_2.00
Homo sapiens
BTAATTAN

NTAATTAV
SELEX
Yin et al.(2017)
LHX4_FL_HT-SELEX
0.677 0.865
LHX4
M05064_2.00
Homo sapiens
BYAATTRV

BYAATTRV
SELEX
Yin et al.(2017)
LHX4_eDBD_Methyl-HT-SELEX_1
0.677 0.865
LHX4
M05065_2.00
Homo sapiens
NTWAYGHN

NDCRTWAN
SELEX
Yin et al.(2017)
LHX4_eDBD_Methyl-HT-SELEX_2
0.677 0.865
LHX4
M05067_2.00
Homo sapiens
NYAATTRN

NYAATTRN
SELEX
Yin et al.(2017)
LHX4_FL_Methyl-HT-SELEX_1
0.677 0.865
LHX4
M05068_2.00
Homo sapiens
NTAAYGHN

NDCRTTAN
SELEX
Yin et al.(2017)
LHX4_FL_Methyl-HT-SELEX_2
0.677 0.865
C4B866_NEMVE
M02052_2.00
Nematostella vectensis
NNTTAATTARNN

NNYTAATTAANN
PBM
Weirauch et al.(2014)
pTH6176
0.642 0.635
Lhx1
M00405_2.00
Mus musculus
TRATDRNNN

NNNYHATYA
PBM
Berger et al.(2008)
Lhx1_2240
0.607 0.731
Lhx5
M00445_2.00
Mus musculus
TAATKRNNN

NNNYMATTA
PBM
Berger et al.(2008)
Lhx5_2279
0.607 0.731
LHX1
M05410_2.00
Homo sapiens
NTRATBRN

NYVATYAN
SELEX
Yin et al.(2017)
LHX1_eDBD_HT-SELEX
0.607 0.731
LHX5
M04936_2.00
Homo sapiens
NTAATTRS

SYAATTAN
SELEX
Yin et al.(2017)
LHX5_FL_HT-SELEX
0.607 0.731
LHX1
M05411_2.00
Homo sapiens
NHRAYGHN

NDCRTYDN
SELEX
Yin et al.(2017)
LHX1_eDBD_Methyl-HT-SELEX
0.607 0.731
LHX5
M04937_2.00
Homo sapiens
NTAAYGAN

NTCRTTAN
SELEX
Yin et al.(2017)
LHX5_FL_Methyl-HT-SELEX_1
0.607 0.731
LHX5
M04938_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
LHX5_FL_Methyl-HT-SELEX_2
0.607 0.731
ZFHX2
M02089_2.00
Homo sapiens
NNTRATYANN

NNTRATYANN
PBM
Weirauch et al.(2014)
pTH5642
0.604 0.462
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MCINX000309-PA Homeodomain 97 148

Links

Other Homeodomain family TFs
Other Melitaea cinxia TFs

Invalid Input OrderBy

597 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action