CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ML17403a
(
Mnemiopsis leidyi
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ML17403a
T220657_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ENSCING00000016045
M02078_2.00
Ciona intestinalis
NNYTAATTRGN
NCYAATTARNN
PBM
Weirauch et al.(2014)
pTH6551
0.636
0.351
HESX1
M00309_2.00
Homo sapiens
HTAATTRGN
NCYAATTAD
PBM
Barrera et al.(2016)
HESX1_REF
0.632
0.316
HESX1
M00306_2.00
Homo sapiens
WRATDRNN
NNYHATYW
PBM
Barrera et al.(2016)
HESX1_E149K
0.632
0.316
HESX1
M00307_2.00
Homo sapiens
TAATTRNN
NNYAATTA
PBM
Barrera et al.(2016)
HESX1_N125S
0.632
0.316
HESX1
M00308_2.00
Homo sapiens
NATAHATRN
NYATDTATN
PBM
Barrera et al.(2016)
HESX1_R160C
0.632
0.298
SNAPOd2T00006620001
M02231_2.00
Oikopleura dioica
NTAATTRN
NYAATTAN
PBM
Weirauch et al.(2014)
pTH5666
0.631
0.351
P79681_ACIBE
M02200_2.00
Acipenser baerii
DTAATTRB
VYAATTAH
PBM
Weirauch et al.(2014)
pTH6156
0.630
0.316
ceh-62
M02187_2.00
Caenorhabditis elegans
NNYAATTRNN
NNYAATTRNN
PBM
Weirauch et al.(2014)
pTH5492
0.622
0.421
Q0N4F9_NEMVE
M02162_2.00
Nematostella vectensis
DTAATTAK
MTAATTAH
PBM
Weirauch et al.(2014)
pTH6150
0.621
0.404
lbl
M00561_2.00
Drosophila melanogaster
NTAAYDRGN
NCYHRTTAN
PBM
Busser et al.(2012a)
Lbl
0.617
0.368
lbe
M03822_2.00
Drosophila melanogaster
TAACRABV
BVTYGTTA
SELEX
Nitta et al.(2015)
lbe_1
0.617
0.368
lbe
M03823_2.00
Drosophila melanogaster
BTVAKBRV
BYVMTBAV
SELEX
Nitta et al.(2015)
lbe_2
0.617
0.368
lbe
M03824_2.00
Drosophila melanogaster
NTAATTRN
NYAATTAN
SELEX
Nitta et al.(2015)
lbe_3
0.617
0.368
lbe
M03825_2.00
Drosophila melanogaster
TAAYRAKN
NMTYRTTA
SELEX
Nitta et al.(2015)
lbe_4
0.617
0.368
lbl
M03815_2.00
Drosophila melanogaster
NTAAYKRG
CYMRTTAN
SELEX
Nitta et al.(2015)
lbl_1
0.617
0.368
lbl
M03816_2.00
Drosophila melanogaster
NTAAYRAGN
NCTYRTTAN
SELEX
Nitta et al.(2015)
lbl_2
0.617
0.368
lbl
M06508_2.00
Drosophila melanogaster
TAATKR
YMATTA
B1H
Mathelier et al.(2014)
MA0232.1
0.617
0.368
lbe
M06510_2.00
Drosophila melanogaster
TAAYNA
TNRTTA
B1H
Mathelier et al.(2014)
MA0231.1
0.617
0.368
lbe
M06299_2.00
Drosophila melanogaster
NHTAAYNA
TNRTTADN
B1H
Zhu et al.(2011)
Lbe_Cell_FBgn0011278
0.617
0.368
lbe
M06300_2.00
Drosophila melanogaster
YTAAYBA
TVRTTAR
B1H
Zhu et al.(2011)
Lbe_SOLEXA_FBgn0011278
0.617
0.368
lbl
M06295_2.00
Drosophila melanogaster
VHTAATKR
YMATTADB
B1H
Zhu et al.(2011)
Lbl_Cell_FBgn0008651
0.617
0.368
lbl
M06296_2.00
Drosophila melanogaster
NHTAAYBA
TVRTTADN
B1H
Zhu et al.(2011)
Lbl_SOLEXA_FBgn0008651
0.617
0.368
LBX1
M02090_2.00
Homo sapiens
NTAAYTRG
CYARTTAN
PBM
Weirauch et al.(2014)
pTH6404
0.617
0.351
NEMVEDRAFT_v1g164989
M02148_2.00
Nematostella vectensis
YTAATTAG
CTAATTAR
PBM
Weirauch et al.(2014)
pTH5994
0.617
0.351
Lbx2
M00465_2.00
Mus musculus
NHAABNRN
NYNVTTDN
PBM
Berger et al.(2008)
Lbx2_3869
0.612
0.351
LBX2
M03224_2.00
Homo sapiens
TAAYYRSNTYNAB
VTNRANSYRRTTA
SELEX
Jolma et al.(2013)
LBX2_1
0.612
0.351
LBX2
M03225_2.00
Homo sapiens
NNTAATTRVN
NBYAATTANN
SELEX
Jolma et al.(2013)
LBX2_2
0.612
0.351
LBX2
M05321_2.00
Homo sapiens
HTAAYRAG
CTYRTTAD
SELEX
Yin et al.(2017)
LBX2_eDBD_HT-SELEX_1
0.612
0.351
LBX2
M05322_2.00
Homo sapiens
NTAATTAAYKRG
CYMRTTAATTAN
SELEX
Yin et al.(2017)
LBX2_eDBD_HT-SELEX_2
0.612
0.351
LBX2
M05323_2.00
Homo sapiens
VYTAATTRGB
VCYAATTARB
SELEX
Yin et al.(2017)
LBX2_eDBD_HT-SELEX_3
0.612
0.351
LBX2
M05324_2.00
Homo sapiens
HTAAYGAG
CTCRTTAD
SELEX
Yin et al.(2017)
LBX2_eDBD_Methyl-HT-SELEX_1
0.612
0.351
LBX2
M05325_2.00
Homo sapiens
ATAATTAATKAG
CTMATTAATTAT
SELEX
Yin et al.(2017)
LBX2_eDBD_Methyl-HT-SELEX_2
0.612
0.351
LBX2
M05326_2.00
Homo sapiens
NNTAATKRDN
NHYMATTANN
SELEX
Yin et al.(2017)
LBX2_eDBD_Methyl-HT-SELEX_3
0.612
0.351
Prrx2
M00486_2.00
Mus musculus
WRATNNN
NNNATYW
PBM
Berger et al.(2008)
Prrx2_3072
0.606
0.404
PRRX2
M03200_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
PRRX2_1
0.606
0.404
Prrx2
M03277_2.00
Mus musculus
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
Prrx2_1
0.606
0.404
PRRX2
M05262_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
PRRX2_FL_HT-SELEX
0.606
0.404
PRRX2
M05258_2.00
Homo sapiens
NTNAYGHN
NDCRTNAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_HT-SELEX_1
0.606
0.404
PRRX2
M05259_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_HT-SELEX_2
0.606
0.404
PRRX2
M09156_2.00
Homo sapiens
HTAATTR
YAATTAD
Misc
Kulakovskiy et al.(2013)
PRRX2_HUMAN.H11MO.0.C
0.606
0.404
Prrx2
M09207_2.00
Mus musculus
HTAATTR
YAATTAD
Misc
Kulakovskiy et al.(2013)
PRRX2_MOUSE.H11MO.0.C
0.606
0.404
PRRX2
M10735_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRRX2_05
0.606
0.404
PRRX2
M10776_2.00
Sus scrofa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRX2_Q2
0.606
0.404
Prrx2
M10767_2.00
Mus musculus
HNVHTAATTRRNHNDW
WHNDNYYAATTADBND
Transfac
Matys et al.(2006)
V$S8_01
0.606
0.404
PRRX2
M05260_2.00
Homo sapiens
NTAAYGHN
NDCRTTAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_Methyl-HT-SELEX_1
0.606
0.404
PRRX2
M05261_2.00
Homo sapiens
NTAATYRN
NYRATTAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_Methyl-HT-SELEX_2
0.606
0.404
PRRX2
M05263_2.00
Homo sapiens
NTAATTRR
YYAATTAN
SELEX
Yin et al.(2017)
PRRX2_FL_Methyl-HT-SELEX_1
0.606
0.404
PRRX2
M05264_2.00
Homo sapiens
HTAAYGHN
NDCRTTAD
SELEX
Yin et al.(2017)
PRRX2_FL_Methyl-HT-SELEX_2
0.606
0.404
Prrx1
M00431_2.00
Mus musculus
TAATTRNN
NNYAATTA
PBM
Berger et al.(2008)
Prrx1_3442
0.606
0.386
PRRX1
M03120_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
PRRX1_1
0.606
0.386
PRRX1
M03121_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
PRRX1_2
0.606
0.386
PRRX1
M03122_2.00
Homo sapiens
TAATTVRRTTA
TAAYYBAATTA
SELEX
Jolma et al.(2013)
PRRX1_3
0.606
0.386
Prrx1
M10770_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PMX1_01
0.606
0.386
PRRX1
M10675_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PMX1_Q6
0.606
0.386
ESX1
M00292_2.00
Homo sapiens
NNTAATNDN
NHNATTANN
PBM
Barrera et al.(2016)
ESX1_REF
0.603
0.333
ESX1
M03137_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
ESX1_1
0.603
0.333
ESX1
M03138_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
ESX1_2
0.603
0.333
ESX1
M05087_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ESX1_eDBD_HT-SELEX
0.603
0.333
ESX1
M05089_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ESX1_FL_HT-SELEX
0.603
0.333
ESX1
M05088_2.00
Homo sapiens
NTAATTRR
YYAATTAN
SELEX
Yin et al.(2017)
ESX1_eDBD_Methyl-HT-SELEX
0.603
0.333
ESX1
M05090_2.00
Homo sapiens
NTAATTRR
YYAATTAN
SELEX
Yin et al.(2017)
ESX1_FL_Methyl-HT-SELEX
0.603
0.333
VSX1
M00269_2.00
Homo sapiens
NNWAAYNNN
NNNRTTWNN
PBM
Barrera et al.(2016)
VSX1_REF
0.602
0.316
Vsx1
M00459_2.00
Mus musculus
NNTAATDDN
NHHATTANN
PBM
Berger et al.(2008)
Vsx1_1728
0.602
0.316
Vsx1
M03267_2.00
Mus musculus
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
Vsx1_1
0.602
0.316
VSX1
M00266_2.00
Homo sapiens
NNTAAYNNN
NNNRTTANN
PBM
Barrera et al.(2016)
VSX1_G160D
0.602
0.316
VSX1
M00267_2.00
Homo sapiens
NNHAAYNNN
NNNRTTDNN
PBM
Barrera et al.(2016)
VSX1_Q175H
0.602
0.316
CG5369
M03876_2.00
Drosophila melanogaster
TAATTHVATTA
TAATBDAATTA
SELEX
Nitta et al.(2015)
CG5369_1
0.602
0.368
CG5369
M03877_2.00
Drosophila melanogaster
TAATTRNNTAATBN
NVATTANNYAATTA
SELEX
Nitta et al.(2015)
CG5369_2
0.602
0.368
CG5369
M03878_2.00
Drosophila melanogaster
TAATTVRATWA
TWATYBAATTA
SELEX
Nitta et al.(2015)
CG5369_3
0.602
0.368
vsx2
M02079_2.00
Danio rerio
NNYTAATTARN
NYTAATTARNN
PBM
Weirauch et al.(2014)
pTH6221
0.601
0.316
SHOX
M02095_2.00
Homo sapiens
NTAATTRN
NYAATTAN
PBM
Weirauch et al.(2014)
pTH5805
0.601
0.351
Shox2
M00439_2.00
Mus musculus
NTAATDDN
NHHATTAN
PBM
Berger et al.(2008)
Shox2_2641
0.601
0.351
SHOX
M03232_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
SHOX_1
0.601
0.351
SHOX2
M03204_2.00
Homo sapiens
BTAATTRN
NYAATTAV
SELEX
Jolma et al.(2013)
SHOX2_1
0.601
0.351
Shox2
M03263_2.00
Mus musculus
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
Shox2_1
0.601
0.351
SHOX
M05366_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
SHOX_eDBD_HT-SELEX
0.601
0.351
Shox2
M10772_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SHOX2_05
0.601
0.351
SHOX
M05367_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
SHOX_eDBD_Methyl-HT-SELEX_1
0.601
0.351
SHOX
M05368_2.00
Homo sapiens
NTAAYGAN
NTCRTTAN
SELEX
Yin et al.(2017)
SHOX_eDBD_Methyl-HT-SELEX_2
0.601
0.351
Uncx
M00443_2.00
Mus musculus
NTAATNDN
NHNATTAN
PBM
Berger et al.(2008)
Uncx4
0.601
0.333
uncx
M02111_2.00
Tetraodon nigroviridis
NNTAATTRN
NYAATTANN
PBM
Weirauch et al.(2014)
pTH5474
0.601
0.333
UNCX
M03191_2.00
Homo sapiens
NWAATTVVRTHWN
NWDAYBBAATTWN
SELEX
Jolma et al.(2013)
UNCX_1
0.601
0.333
UNCX
M03192_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
UNCX_2
0.601
0.333
Uncx
M03264_2.00
Mus musculus
NTAATTVRATTAN
NTAATYBAATTAN
SELEX
Jolma et al.(2013)
Uncx_1
0.601
0.333
Uncx
M03265_2.00
Mus musculus
NTAATTRR
YYAATTAN
SELEX
Jolma et al.(2013)
Uncx_2
0.601
0.333
UNCX
M05240_2.00
Homo sapiens
NYAATTRV
BYAATTRN
SELEX
Yin et al.(2017)
UNCX_eDBD_HT-SELEX
0.601
0.333
UNCX
M05241_2.00
Homo sapiens
NYRRYKNN
NNMRYYRN
SELEX
Yin et al.(2017)
UNCX_eDBD_Methyl-HT-SELEX
0.601
0.333
ro
M06495_2.00
Drosophila melanogaster
YTAATTA
TAATTAR
B1H
Mathelier et al.(2014)
MA0241.1
0.601
0.298
ro
M06264_2.00
Drosophila melanogaster
NYTAATTA
TAATTARN
B1H
Zhu et al.(2011)
Ro_Cell_FBgn0003267
0.601
0.298
ro
M06265_2.00
Drosophila melanogaster
HTAATTR
YAATTAD
B1H
Zhu et al.(2011)
Ro_SOLEXA_FBgn0003267
0.601
0.298
CG11294
M03855_2.00
Drosophila melanogaster
TAATTVVATTA
TAATBBAATTA
SELEX
Nitta et al.(2015)
CG11294_1
0.601
0.368
CG11294
M03856_2.00
Drosophila melanogaster
TAATTDVATTA
TAATBHAATTA
SELEX
Nitta et al.(2015)
CG11294_2
0.601
0.368
CG11294
M06531_2.00
Drosophila melanogaster
TAATTAA
TTAATTA
B1H
Mathelier et al.(2014)
MA0172.1
0.601
0.368
CG11294
M06337_2.00
Drosophila melanogaster
TAATTAA
TTAATTA
B1H
Zhu et al.(2011)
CG11294_Cell_FBgn0030058
0.601
0.368
CG11294
M06338_2.00
Drosophila melanogaster
HTAATTR
YAATTAD
B1H
Zhu et al.(2011)
CG11294_SOLEXA_FBgn0030058
0.601
0.368
CBG07641
M02063_2.00
Caenorhabditis briggsae
NBTAATTAVN
NBTAATTAVN
PBM
Weirauch et al.(2014)
pTH6520
0.599
0.333
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ML17403a-PA
Homeodomain
181
237
RRKRTVFSPAEITILEGVYEEHKFLNPTLKANILSRVNVSSNVVVMWFQNRRAKDRA
Links
Other
Homeodomain
family TFs
Other
Mnemiopsis leidyi
TFs
949 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy