ML223533a (Mnemiopsis leidyi)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ML223533a T220665_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Six2
M00425_2.00
Mus musculus
NNAYMYNN

NNRKRTNN
PBM
Berger et al.(2008)
Six2_2307
0.853 0.945
Six1
M00512_2.00
Mus musculus
NNDATMYNNN

NNNRKATHNN
PBM
Berger et al.(2008)
Six1_0935
0.853 0.945
SIX1
M05094_2.00
Homo sapiens
NNYGATACVB

VBGTATCRNN
SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX
0.853 0.945
SIX1
M05096_2.00
Homo sapiens
NNYGATAYVB

VBRTATCRNN
SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX
0.853 0.945
SIX2
M05285_2.00
Homo sapiens
NNYGATACSB

VSGTATCRNN
SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX
0.853 0.945
SIX2
M05287_2.00
Homo sapiens
NSGTRWCRYN

NRYGWYACSN
SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX
0.853 0.945
SIX1
M08130_2.00
Homo sapiens
GWAACCTGANM

KNTCAGGTTWC
ChIP-seq
Mathelier et al.(2014)
MA1118.1
0.853 0.945
SIX2
M08133_2.00
Homo sapiens
NNNTGWAACCTGAKMH

DKMTCAGGTTWCANNN
ChIP-seq
Mathelier et al.(2014)
MA1119.1
0.853 0.945
SIX1
M09142_2.00
Homo sapiens
DGWAAYHTGABMYN

NRKVTCADRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A
0.853 0.945
SIX2
M09157_2.00
Homo sapiens
DGWAAYHHGABMH

DKVTCDDRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A
0.853 0.945
Six2
M09185_2.00
Mus musculus
DGWAAYHYRABMYB

VRKVTYRDRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A
0.853 0.945
Six1
M09579_2.00
Mus musculus
GWAAYHTGABMH

DKVTCADRTTWC
Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150
0.853 0.945
SIX1
M10684_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX1_Q3_01
0.853 0.945
SIX1
M10685_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX1_Q3
0.853 0.945
SIX1
M05095_2.00
Homo sapiens
NNYGATABNB

VNVTATCRNN
SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX
0.853 0.945
SIX1
M05097_2.00
Homo sapiens
NNYGATAYSB

VSRTATCRNN
SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX
0.853 0.945
SIX2
M05286_2.00
Homo sapiens
NBRTATCRNN

NNYGATAYVN
SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX
0.853 0.945
SIX2
M05288_2.00
Homo sapiens
VBRTAWCRNN

NNYGWTAYVB
SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX
0.853 0.945
so
M02117_2.00
Drosophila melanogaster
NDATMYNNN

NNNRKATHN
PBM
Weirauch et al.(2014)
pTH5690
0.852 0.927
so
M03800_2.00
Drosophila melanogaster
NYGATAYB

VRTATCRN
SELEX
Nitta et al.(2015)
so_1
0.852 0.927
so
M03801_2.00
Drosophila melanogaster
YKATAYNNNYGATAY

RTATCRNNNRTATMR
SELEX
Nitta et al.(2015)
so_2
0.852 0.927
so
M03802_2.00
Drosophila melanogaster
YGATACGTATCR

YGATACGTATCR
SELEX
Nitta et al.(2015)
so_3
0.852 0.927
so
M03803_2.00
Drosophila melanogaster
RTATCRYGATAC

GTATCRYGATAY
SELEX
Nitta et al.(2015)
so_4
0.852 0.927
so
M06497_2.00
Drosophila melanogaster
TGATAC

GTATCA
B1H
Mathelier et al.(2014)
MA0246.1
0.852 0.927
so
M06268_2.00
Drosophila melanogaster
NRTGATA

TATCAYN
B1H
Zhu et al.(2011)
So_Cell_FBgn0003460
0.852 0.927
so
M06269_2.00
Drosophila melanogaster
NNNTGATA

TATCANNN
B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460
0.852 0.927
Six4
M00461_2.00
Mus musculus
NNKABMHNN

NNDKVTMNN
PBM
Berger et al.(2008)
Six4_2860
0.708 0.691
Six4
M00563_2.00
Drosophila melanogaster
NNDANMHNN

NNDKNTHNN
PBM
Busser et al.(2012a)
Six4
0.708 0.691
SIX4
M04939_2.00
Homo sapiens
NVYGATACVB

VBGTATCRBN
SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX
0.708 0.691
Six4
M06530_2.00
Drosophila melanogaster
TGABAC

GTVTCA
B1H
Mathelier et al.(2014)
MA0204.1
0.708 0.691
Six4
M06334_2.00
Drosophila melanogaster
WDDTGABAC

GTVTCAHHW
B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364
0.708 0.691
Six4
M06335_2.00
Drosophila melanogaster
NTGAKACB

VGTMTCAN
B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364
0.708 0.691
Six4
M06336_2.00
Drosophila melanogaster
NNNTGABA

TVTCANNN
B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364
0.708 0.691
Six4
M09198_2.00
Mus musculus
DGDAABHNSASNNN

NNNSTSNDVTTHCH
Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C
0.708 0.691
SIX4
M10646_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX4_Q3
0.708 0.691
SIX4
M04940_2.00
Homo sapiens
NBGTAWCRHN

NDYGWTACVN
SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX
0.708 0.691
SIX5
M08208_2.00
Homo sapiens
GARWTGTAGT

ACTACAWYTC
ChIP-seq
Contrino et al.(2012)
Mv121
0.708 0.655
SIX5
M08209_2.00
Homo sapiens
GGAGTTGT

ACAACTCC
ChIP-seq
Contrino et al.(2012)
Mv123
0.708 0.655
SIX5
M10738_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX5_01
0.708 0.655
SIX5
M10739_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX5_02
0.708 0.655
ceh-34
M00672_2.00
Caenorhabditis elegans
NNNRDAWNNN

NNNWTHYNNN
PBM
Narasimhan et al.(2015)
pTH9708
0.664 0.636
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ML223533a-PA Homeodomain 238 292

Links

Other Homeodomain family TFs
Other Mnemiopsis leidyi TFs

540 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AALB007964 Anopheles albimanus AALB007964 I 0.000
AQUA009218 Anopheles quadriannulatus AQUA009218 I 0.000
KGM_03494 Danaus plexippus KGM_03494 I 0.000
AMIN006671 Anopheles minimus AMIN006671 I 0.000
ENSONIG00000017476 Oreochromis niloticus ENSONIG00000017476 I 0.000
AMEC021622 Anopheles melas AMEC021622 I 0.000
LCUP006648 Lucilia cuprina LCUP006648 I 0.000
AFUN000102 Anopheles funestus AFUN000102 I 0.000
AFAF010850 Anopheles farauti AFAF010850 I 0.000
ACUA025040 Anopheles culicifacies ACUA025040 I 0.000
ENSORLG00000005403 Oryzias latipes ENSORLG00000005403 I 0.000
HMEL008134 Heliconius melpomene HMEL008134 I 0.000
ACOM027359 Anopheles coluzzii ACOM027359 I 0.000
ACOM023265 Anopheles coluzzii ACOM023265 I 0.000
AALB007758 Anopheles albimanus AALB007758 I 0.000
AATE009363 Anopheles atroparvus AATE009363 I 0.000
AARA003714 Anopheles arabiensis AARA003714 I 0.000
ASTEI03921 Anopheles stephensi ASTEI03921 I 0.000
MDOA008891 Musca domestica MDOA008891 I 0.000
DAPPUDRAFT_311851 Daphnia pulex DAPPUDRAFT_311851 I 0.000
Cflo_03420--XP_394146.3_APIME Camponotus floridanus Cflo_03420--XP_394146.3_APIME I 0.000
CapteG165634 Capitella teleta CapteG165634 I 0.000
BGIBMGA003821 Bombyx mori BGIBMGA003821 I 0.000
AGAP010058 Anopheles gambiae AGAP010058 I 0.000
AMEM005407 Anopheles merus AMEM005407 I 0.000
ADAC005208 Anopheles darlingi ADAC005208 I 0.000
ADIR001121 Anopheles dirus ADIR001121 I 0.000
AAEL011013 Aedes aegypti AAEL011013 I 0.000
CpipJ_CPIJ009948 Culex pipiens CpipJ_CPIJ009948 I 0.000
CPIJ009948 Culex quinquefasciatus CPIJ009948 I 0.000
Cmyd_10005300 Chelonia mydas Cmyd_10005300 N 0.000
LotgiG106747 Lottia gigantea LotgiG106747 N 0.000
RPRC001595 Rhodnius prolixus RPRC001595 N 0.000
SMAR001482 Strigamia maritima SMAR001482 N 0.000
Aan_R007307 Calypte anna Aan_R007307 N 0.000
Aan_R007898 Calypte anna Aan_R007898 N 0.000
Afo_R003668 Aptenodytes forsteri Afo_R003668 N 0.000
tetur06g06010 Tetranychus urticae tetur06g06010 N 0.000
Afo_R004895 Aptenodytes forsteri Afo_R004895 N 0.000
SPU_013962 Strongylocentrotus purpuratus SPU_013962 N 0.000
Smp_165270 Schistosoma mansoni Smp_165270 N 0.000
Alligator_sinensis_CCG004879.1 Alligator sinensis Alligator_sinensis_CCG004879.1 N 0.000
Brh_R001528 Buceros rhinoceros Brh_R001528 N 0.000
PHUM080130 Pediculus humanus PHUM080130 N 0.000
L798_01260 Zootermopsis nevadensis L798_01260 N 0.000
ENSNLEG00000013870 Nomascus leucogenys ENSNLEG00000013870 N 0.000
SIM1 Tupaia belangeri ENSTBEG00000005949 N 0.000
SIM2 Tupaia belangeri ENSTBEG00000011573 N 0.000
SIM2 Taeniopygia guttata ENSTGUG00000004856 N 0.000
SIM1 Taeniopygia guttata ENSTGUG00000012278 N 0.000
sim1b Tetraodon nigroviridis ENSTNIG00000012304 N 0.000
ENSTNIG00000019722 Tetraodon nigroviridis ENSTNIG00000019722 N 0.000
SIM1 Takifugu rubripes ENSTRUG00000010040 N 0.000
sim1b Takifugu rubripes ENSTRUG00000018267 N 0.000
ENSTSYG00000005255 Tarsius syrichta ENSTSYG00000005255 N 0.000
ENSTSYG00000007116 Tarsius syrichta ENSTSYG00000007116 N 0.000
SIM2 Tursiops truncatus ENSTTRG00000017084 N 0.000
SIM1 Vicugna pacos ENSVPAG00000001407 N 0.000
ENSXMAG00000016785 Xiphophorus maculatus ENSXMAG00000016785 N 0.000
ENSXMAG00000019075 Xiphophorus maculatus ENSXMAG00000019075 N 0.000
HelroG89969 Helobdella robusta HelroG89969 N 0.000
SIM1 Tursiops truncatus ENSTTRG00000008248 N 0.000
ENSSTOG00000027359 Ictidomys tridecemlineatus ENSSTOG00000027359 N 0.000
Cmyd_10020168 Chelonia mydas Cmyd_10020168 N 0.000
ENSP00000262901 Macaca fascicularis ENSP00000262901 N 0.000
ACUA010023 Anopheles culicifacies ACUA010023 N 0.000
Myotis_brandtii_SIM1_10034719 Myotis brandtii Myotis_brandtii_SIM1_10034719 N 0.000
AEPI002639 Anopheles epiroticus AEPI002639 N 0.000
AFUN005600 Anopheles funestus AFUN005600 N 0.000
AMAM016994 Anopheles maculatus AMAM016994 N 0.000
AMEC013102 Anopheles melas AMEC013102 N 0.000
SMRZ_0000943001 Schistosoma margrebowiei SMRZ_0000943001 N 0.000
AMIN005129 Anopheles minimus AMIN005129 N 0.000
AQUA008255 Anopheles quadriannulatus AQUA008255 N 0.000
ASTEI03596 Anopheles stephensi ASTEI03596 N 0.000
A_05788 Schistosoma haematobium A_05788 N 0.000
csin104979 Clonorchis sinensis csin104979 N 0.000
D915_00831 Fasciola hepatica D915_00831 N 0.000
PXEA_0002490601 Protopolystoma xenopodis PXEA_0002490601 N 0.000
SMTD_0000610501 Schistosoma mattheei SMTD_0000610501 N 0.000
SROB_0001806001 Schistosoma rodhaini SROB_0001806001 N 0.000
T265_14441 Opisthorchis viverrini T265_14441 N 0.000
ACOM042361 Anopheles coluzzii ACOM042361 N 0.000
ACHR009289 Anopheles christyi ACHR009289 N 0.000
ENSP00000290399-D1 Bos grunniens ENSP00000290399-D1 N 0.000
ENSP00000290399 Macaca fascicularis ENSP00000290399 N 0.000
ENSP00000358210-D1 Bos grunniens ENSP00000358210-D1 N 0.000
Gfo_R003852 Geospiza fortis Gfo_R003852 N 0.000
Gfo_R010900 Geospiza fortis Gfo_R010900 N 0.000
Ogr12757 Ophisaurus gracilis Ogr12757 N 0.000
Pvit_04770 Pogona vitticeps Pvit_04770 N 0.000
Pvit_09298 Pogona vitticeps Pvit_09298 N 0.000
Tal_R009812 Tyto alba Tal_R009812 N 0.000
estExt_GenewiseH_1.C_790104 Branchiostoma floridae estExt_GenewiseH_1.C_790104 N 0.000
Ocbimv22031168m.g Octopus bimaculoides Ocbimv22031168m.g N 0.000
Sjc_0126700 Schistosoma japonicum Sjc_0126700 N 0.000
SMU15015785 Schmidtea mediterranea SMU15015785 N 0.000
sim2.S Xenopus laevis XB-GENE-1013959 N 0.000
sim1 Xenopus tropicalis XB-GENE-485816 N 0.000
XP_002941575 Xenopus tropicalis XP_002941575 N 0.000
AARA010261 Anopheles arabiensis AARA010261 N 0.000
TRE_0000325801 Trichobilharzia regenti TRE_0000325801 N 0.000
ENSGMOG00000018211 Gadus morhua ENSGMOG00000018211 N 0.000
ENSFALG00000005247 Ficedula albicollis ENSFALG00000005247 N 0.000
SIM2 Echinops telfairi ENSETEG00000012055 N 0.000
SIM1 Echinops telfairi ENSETEG00000010692 N 0.000
SIM1 Erinaceus europaeus ENSEEUG00000009806 N 0.000
SIM2 Equus caballus ENSECAG00000016631 N 0.000
SIM1 Equus caballus ENSECAG00000009161 N 0.000
Sim2 Dipodomys ordii ENSDORG00000011548 N 0.000
ENSDORG00000008569 Dipodomys ordii ENSDORG00000008569 N 0.000
SIM1 Dasypus novemcinctus ENSDNOG00000010261 N 0.000
SIM1 Felis catus ENSFCAG00000005942 N 0.000
SIM2 Felis catus ENSFCAG00000023063 N 0.000
ENSGMOG00000006637 Gadus morhua ENSGMOG00000006637 N 0.000
SIM1 Gorilla gorilla ENSGGOG00000017108 N 0.000
SIM2 Gorilla gorilla ENSGGOG00000014943 N 0.000
SIM2 Gallus gallus ENSGALG00000016044 N 0.000
SIM1 Gallus gallus ENSGALG00000015466 N 0.000
sim1a Gasterosteus aculeatus ENSGACG00000014149 N 0.000
sim1b Gasterosteus aculeatus ENSGACG00000009479 N 0.000
SIM2 Homo sapiens ENSG00000159263 N 0.000
SIM1 Homo sapiens ENSG00000112246 N 0.000
SIM2 Dasypus novemcinctus ENSDNOG00000003669 N 0.000
sim1a Danio rerio ENSDARG00000023316 N 0.000
sim1b Danio rerio ENSDARG00000013789 N 0.000
ENSAPLG00000014050 Anas platyrhynchos ENSAPLG00000014050 N 0.000
ENSAPLG00000012534 Anas platyrhynchos ENSAPLG00000012534 N 0.000
ENSAMXG00000008897 Astyanax mexicanus ENSAMXG00000008897 N 0.000
ENSAMXG00000001377 Astyanax mexicanus ENSAMXG00000001377 N 0.000
ENSAMEG00000014765 Ailuropoda melanoleuca ENSAMEG00000014765 N 0.000
ENSAMEG00000005588 Ailuropoda melanoleuca ENSAMEG00000005588 N 0.000
SIM1 Anolis carolinensis ENSACAG00000010256 N 0.000
SIM2 Anolis carolinensis ENSACAG00000008765 N 0.000
CGI_10023142 Crassostrea gigas CGI_10023142 N 0.000
SIM1 Bos taurus ENSBTAG00000002294 N 0.000
SIM1 Canis familiaris ENSCAFG00000003538 N 0.000
ENSCSAVG00000003790 Ciona savignyi ENSCSAVG00000003790 N 0.000
ENSCSAG00000014652 Chlorocebus sabaeus ENSCSAG00000014652 N 0.000
ENSCSAG00000008567 Chlorocebus sabaeus ENSCSAG00000008567 N 0.000
SIM2 Cavia porcellus ENSCPOG00000023156 N 0.000
SIM1 Cavia porcellus ENSCPOG00000013987 N 0.000
SIM2 Callithrix jacchus ENSCJAG00000002704 N 0.000
SIM1 Callithrix jacchus ENSCJAG00000001495 N 0.000
SIM1 Choloepus hoffmanni ENSCHOG00000005099 N 0.000
SIM2 Canis familiaris ENSCAFG00000009686 N 0.000
AGAP000773 Anopheles gambiae AGAP000773 N 0.000
ENSLACG00000012873 Latimeria chalumnae ENSLACG00000012873 N 0.000
SIM1 Sus scrofa ENSSSCG00000004357 N 0.000
ENSPPYG00000011405 Pongo abelii ENSPPYG00000011405 N 0.000
SIM2 Procavia capensis ENSPCAG00000015289 N 0.000
SIM1 Procavia capensis ENSPCAG00000008763 N 0.000
ENSPANG00000020491 Papio anubis ENSPANG00000020491 N 0.000
ENSPANG00000011218 Papio anubis ENSPANG00000011218 N 0.000
SIM1 Ochotona princeps ENSOPRG00000013168 N 0.000
ENSONIG00000016544 Oreochromis niloticus ENSONIG00000016544 N 0.000
ENSONIG00000014696 Oreochromis niloticus ENSONIG00000014696 N 0.000
SIM2 Otolemur garnettii ENSOGAG00000028990 N 0.000
ENSPPYG00000016868 Pongo abelii ENSPPYG00000016868 N 0.000
ENSPSIG00000002579 Pelodiscus sinensis ENSPSIG00000002579 N 0.000
ENSSHAG00000016220 Sarcophilus harrisii ENSSHAG00000016220 N 0.000
ENSSHAG00000009425 Sarcophilus harrisii ENSSHAG00000009425 N 0.000
SIM1 Sorex araneus ENSSARG00000000736 N 0.000
Sim2 Rattus norvegicus ENSRNOG00000054203 N 0.000
Sim1 Rattus norvegicus ENSRNOG00000037600 N 0.000
SIM1 Pteropus vampyrus ENSPVAG00000012822 N 0.000
SIM2 Pteropus vampyrus ENSPVAG00000000853 N 0.000
SIM1 Pan troglodytes ENSPTRG00000018447 N 0.000
SIM2 Pan troglodytes ENSPTRG00000013894 N 0.000
SIM1 Otolemur garnettii ENSOGAG00000009865 N 0.000
SIM2 Oryctolagus cuniculus ENSOCUG00000012903 N 0.000
SIM1 Oryctolagus cuniculus ENSOCUG00000002759 N 0.000
ENSMMUG00000015564 Macaca mulatta ENSMMUG00000015564 N 0.000
SIM1 Myotis lucifugus ENSMLUG00000002874 N 0.000
SIM2 Microcebus murinus ENSMICG00000013168 N 0.000
SIM1 Microcebus murinus ENSMICG00000008851 N 0.000
ENSMEUG00000011682 Macropus eugenii ENSMEUG00000011682 N 0.000
ENSLOCG00000016561 Lepisosteus oculatus ENSLOCG00000016561 N 0.000
ENSLOCG00000005059 Lepisosteus oculatus ENSLOCG00000005059 N 0.000
SIM1 Loxodonta africana ENSLAFG00000006594 N 0.000
SIM2 Loxodonta africana ENSLAFG00000000122 N 0.000
SIM1 Macaca mulatta ENSMMUG00000022285 N 0.000
SIM1 Monodelphis domestica ENSMODG00000018087 N 0.000
ENSOARG00000014072 Ovis aries ENSOARG00000014072 N 0.000
ENSOARG00000011739 Ovis aries ENSOARG00000011739 N 0.000
SIM1 Ornithorhynchus anatinus ENSOANG00000008943 N 0.000
ENSNLEG00000004481 Nomascus leucogenys ENSNLEG00000004481 N 0.000
Sim2 Mus musculus ENSMUSG00000062713 N 0.000
Sim1 Mus musculus ENSMUSG00000019913 N 0.000
ENSMPUG00000008240 Mustela putorius furo ENSMPUG00000008240 N 0.000
ENSMPUG00000001668 Mustela putorius furo ENSMPUG00000001668 N 0.000
SIM2 Monodelphis domestica ENSMODG00000021008 N 0.000
ENSLACG00000015924 Latimeria chalumnae ENSLACG00000015924 N 0.000