CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MLOC_1969
(
Hordeum vulgare
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
MLOC_1969
T220681_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
estExt_gwp_gw1.C_70211
M02220_2.00
Physcomitrella patens
HMATNANDNN
NNHNTNATKD
PBM
Weirauch et al.(2014)
pTH8489
0.418
1.000
ATHB-6
M02040_2.00
Arabidopsis thaliana
HATNATTDN
NHAATNATD
PBM
Weirauch et al.(2014)
pTH7670
0.387
1.000
ATHB-16
M02050_2.00
Arabidopsis thaliana
YAATMATT
AATKATTR
PBM
Weirauch et al.(2014)
pTH7270
0.387
1.000
ATHB-6
M06909_2.00
Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN
Dap-seq
OMalley et al.(2016)
ATHB6_col_a
0.387
1.000
ATHB-6
M06910_2.00
Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN
Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a
0.387
1.000
HAT5
M06914_2.00
Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN
Dap-seq
OMalley et al.(2016)
HAT5_col_a
0.387
1.000
HAT5
M06915_2.00
Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW
Dap-seq
OMalley et al.(2016)
HAT5_colamp_a
0.387
1.000
HAT5
M02683_2.00
Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS
SELEX
Mathelier et al.(2014)
MA0008.2
0.387
1.000
HAT5
M10624_2.00
Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR
Transfac
Matys et al.(2006)
P$ATHB1_01
0.387
1.000
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MLOC_1969.1
Homeodomain
1
14
VAVWFQNRRARWKT
Links
Other
Homeodomain
family TFs
Other
Hordeum vulgare
TFs
680 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy