MLOC_80844 (Hordeum vulgare)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 MLOC_80844 T220733_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HAT2
M06929_2.00
Arabidopsis thaliana
NHAATGATTRN

NYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT2_colamp_a
0.827 0.789
HAT2
M06930_2.00
Arabidopsis thaliana
WNYAATCATWD

HWATGATTRNW
Dap-seq
OMalley et al.(2016)
HAT2_col_v31
0.827 0.789
HAT22
M06926_2.00
Arabidopsis thaliana
NNYAATCATT

AATGATTRNN
Dap-seq
OMalley et al.(2016)
HAT22_col_a
0.803 0.772
HAT1
M02047_2.00
Arabidopsis thaliana
NMATGATTRN

NYAATCATKN
PBM
Weirauch et al.(2014)
pTH8107
0.797 0.825
HAT1
M06922_2.00
Arabidopsis thaliana
NHAATGATTRNNWDW

WHWNNYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT1_col_a
0.797 0.825
HAT1
M06923_2.00
Arabidopsis thaliana
NYAATCATTDN

NHAATGATTRN
Dap-seq
OMalley et al.(2016)
HAT1_colamp_a
0.797 0.825
ATHB-4
M01065_2.00
Arabidopsis thaliana
NBMTGCATRNN

NNYATGCAKVN
PBM
Sullivan et al.(2014)
pTH8184
0.792 0.807
ATHB-4
M02042_2.00
Arabidopsis thaliana
NNWTNATTRN

NYAATNAWNN
PBM
Weirauch et al.(2014)
pTH8667
0.792 0.807
HAT3
M00728_2.00
Arabidopsis thaliana
DTGATTRV

BYAATCAH
PBM
Chang et al.(2013)
pTH7400
0.792 0.789
ATHB-X
M06902_2.00
Arabidopsis thaliana
HHAATRATTRN

NYAATYATTDD
Dap-seq
OMalley et al.(2016)
ATHB18_col_a
0.773 0.649
ATHB-X
M06903_2.00
Arabidopsis thaliana
NYAATGATTRV

BYAATCATTRN
Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a
0.773 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MLOC_80844.1 Homeodomain 76 132

Links

Other Homeodomain family TFs
Other Hordeum vulgare TFs

694 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK00843.1 Cannabis sativa PK00843.1 I 0.000
Bostr.25542s0069 Boechera stricta Bostr.25542s0069 I 0.000
Aquca_006_00159 Aquilegia coerulea Aquca_006_00159 I 0.000
mgf004912m Mimulus guttatus mgf004912m I 0.000
mgf000302m Mimulus guttatus mgf000302m I 0.000
Cucsa.382190 Cucumis sativus Cucsa.382190 I 0.000
cassava38273.valid.m1 Manihot esculenta cassava38273.valid.m1 I 0.000
cassava30160.valid.m1 Manihot esculenta cassava30160.valid.m1 I 0.000
Cla016125 Citrullus lanatus Cla016125 I 0.000
Cla016124 Citrullus lanatus Cla016124 I 0.000
Ca_27693 Cicer arietinum Ca_27693 I 0.000
Ciclev10028062m.g Citrus clementina Ciclev10028062m.g I 0.000
Eucgr.I01335 Eucalyptus grandis Eucgr.I01335 I 0.000
Thhalv10024895m.g Eutrema salsugineum Thhalv10024895m.g I 0.000
SapurV1A.0379s0290 Salix purpurea SapurV1A.0379s0290 I 0.000
SapurV1A.0091s0130 Salix purpurea SapurV1A.0091s0130 I 0.000
orange1.1g007579m.g Citrus sinensis orange1.1g007579m.g I 0.000
Lus10042057.g Linum usitatissimum Lus10042057.g I 0.000
Lus10018061.g Linum usitatissimum Lus10018061.g I 0.000
Gorai.005G248900 Gossypium raimondii Gorai.005G248900 I 0.000
Gorai.001G243800 Gossypium raimondii Gorai.001G243800 I 0.000
gene01680-v1.0-hybrid Fragaria vesca gene01680-v1.0-hybrid I 0.000
evm.TU.supercontig_150.7 Carica papaya evm.TU.supercontig_150.7 I 0.000
Cucsa.382180 Cucumis sativus Cucsa.382180 I 0.000
VIT_03s0038g00860 Vitis vinifera VIT_03s0038g00860 I 0.000
GLYMA12G04050 Glycine max GLYMA12G04050 I 0.000
GLYMA11G11791 Glycine max GLYMA11G11791 I 0.000
GLYMA04G02850 Glycine max GLYMA04G02850 I 0.000
F775_32059 Aegilops tauschii F775_32059 I 0.000
BRADI3G41980 Brachypodium distachyon BRADI3G41980 I 0.000
Bra033582 Brassica rapa Bra033582 I 0.000
Bra010722 Brassica rapa Bra010722 I 0.000
Bo7g119550 Brassica oleracea Bo7g119550 I 0.000
BGIOSGA029106 Oryza indica BGIOSGA029106 I 0.000
BGIOSGA029105 Oryza indica BGIOSGA029105 I 0.000
GSMUA_Achr3G12290_001 Musa acuminata GSMUA_Achr3G12290_001 I 0.000
MLOC_75510 Hordeum vulgare MLOC_75510 I 0.000
TRIUR3_31242 Triticum urartu TRIUR3_31242 I 0.000
Traes_7DS_3463CAE33 Triticum aestivum Traes_7DS_3463CAE33 I 0.000
Traes_7BS_7B68879A9 Triticum aestivum Traes_7BS_7B68879A9 I 0.000
TCM_006766 Theobroma cacao TCM_006766 I 0.000
Solyc01g110480.2 Solanum lycopersicum Solyc01g110480.2 I 0.000
AT4G38900 Arabidopsis thaliana AT4G38900 I 0.000
POPTR_0009s12830 Populus trichocarpa POPTR_0009s12830 I 0.000
POPTR_0004s17080 Populus trichocarpa POPTR_0004s17080 I 0.000
PGSC0003DMG400001659 Solanum tuberosum PGSC0003DMG400001659 I 0.000
MTR_4g072090 Medicago truncatula MTR_4g072090 I 0.000
GSMUA_Achr1G08090_001 Musa acuminata GSMUA_Achr1G08090_001 N 0.000
Ca_10755 Cicer arietinum Ca_10755 N 0.000