MTR_4g088375 (Medicago truncatula)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 MTR_4g088375 T220817_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RLT1
M02038_2.00
Arabidopsis thaliana
NDHTCWWN

NWWGADHN
PBM
Weirauch et al.(2014)
pTH5432
0.855 0.807
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH30986 Homeodomain 32 88
KEH30988 Homeodomain 32 88
KEH30989 Homeodomain 32 88

Links

Other Homeodomain family TFs
Other Medicago truncatula TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ca_00337 Cicer arietinum Ca_00337 I 0.867
Ca_06343 Cicer arietinum Ca_06343 I 0.867
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.862
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.862
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.862
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.862
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.862
Pm010098 Prunus mume Pm010098 I 0.862
Cla009803 Citrullus lanatus Cla009803 I 0.862
MDP0000192108 Malus domestica MDP0000192108 I 0.862
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.862
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.862
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.861
PK13272.1 Cannabis sativa PK13272.1 I 0.860
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.860
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.857
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.857
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.857
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.857
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.857
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.856
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.855
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.855
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.855
RLT1 Arabidopsis thaliana AT1G28420 D 0.855
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.855
Bo5g055970 Brassica oleracea Bo5g055970 I 0.854
Bra032908 Brassica rapa Bra032908 I 0.853
MDP0000288192 Malus domestica MDP0000288192 I 0.850
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.849
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.846
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.846
TCM_029805 Theobroma cacao TCM_029805 I 0.846
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.846
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.835
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.834
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.833
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.833
mgf006858m Mimulus guttatus mgf006858m I 0.825
Bo3g143570 Brassica oleracea Bo3g143570 I 0.822
Bra010869 Brassica rapa Bra010869 I 0.822
mgf006635m Mimulus guttatus mgf006635m I 0.808
30190.m011307 Ricinus communis 30190.m011307 I 0.794
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.778
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.719
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.686
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.686
OBART05G25730 Oryza barthii OBART05G25730 I 0.686
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.686
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.686
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.686
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.686
PK06068.1 Cannabis sativa PK06068.1 I 0.683
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.683
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.683
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.681
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.681
Ca_11272 Cicer arietinum Ca_11272 I 0.681
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.681
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.680
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.680
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.671
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.671
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.671
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.671
29983.m003128 Ricinus communis 29983.m003128 I 0.671
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.671
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.671
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.671
TCM_008214 Theobroma cacao TCM_008214 I 0.671
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.670
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.670
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.670
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.670
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.670
Bo7g067190 Brassica oleracea Bo7g067190 I 0.668
Bra033725 Brassica rapa Bra033725 I 0.667
RLT2 Arabidopsis thaliana AT5G44180 I 0.664
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.659
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.653
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.653
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.650
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.649
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.649
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.649
OB01G35240 Oryza brachyantha OB01G35240 I 0.649
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.649
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.649
OS01G0672201 Oryza sativa OS01G0672201 I 0.649
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.649
Si004333m.g Setaria italica Si004333m.g I 0.649
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.649
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.649
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.649
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.649
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.649
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.649
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.647
F775_01844 Aegilops tauschii F775_01844 I 0.647
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.647
Si020949m.g Setaria italica Si020949m.g I 0.643
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.642
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.642
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.641
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.641
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.640
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.640
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.639
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.639
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.633
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.632