CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NEMVEDRAFT_v1g101664
(
Nematostella vectensis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
NEMVEDRAFT_v1g101664
T220966_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NEMVEDRAFT_v1g101664
M02142_2.00
Nematostella vectensis
WATCRATC
GATYGATW
PBM
Weirauch et al.(2014)
pTH5552
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q0N4H9_NEMVE
M02165_2.00
Nematostella vectensis
NNYRWWNNN
NNNWWYRNN
PBM
Weirauch et al.(2014)
pTH6101
0.609
0.526
NEMVEDRAFT_v1g129868
M02146_2.00
Nematostella vectensis
NYRAWNDNN
NNHNWTYRN
PBM
Weirauch et al.(2014)
pTH5749
0.605
0.491
CBG20882
M01244_2.00
Caenorhabditis briggsae
NDHDATDRN
NYHATHDHN
PBM
Lambert et al.(2019)
pTH11477
0.604
0.456
For this family, TFs with SR scores >
0.599
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02142_2.00
Homeodomain
1
57
QKQRPLFGQKQIQRLEEEFVCEKYISKSRRSALAAEIDLTDAQVRTWFQNRRTRWRK
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EDO42162
Homeodomain
2
58
QKQRPLFGQKQIQRLEEEFVCEKYISKSRRSALAAEIDLTDAQVRTWFQNRRTRWRK
Links
Other
Homeodomain
family TFs
Other
Nematostella vectensis
TFs
35 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy