CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NEMVEDRAFT_v1g150808
(
Nematostella vectensis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
NEMVEDRAFT_v1g150808
T221006_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Duxbl1
M02099_2.00
Mus musculus
NTGATTRNN
NNYAATCAN
PBM
Weirauch et al.(2014)
pTH6453
0.676
0.630
ESX1
M00291_2.00
Homo sapiens
NNTRATNRN
NYNATYANN
PBM
Barrera et al.(2016)
ESX1_K193R
0.621
0.481
Q4RRY4_TETNG
M02169_2.00
Tetraodon nigroviridis
NNYAATYAN
NTRATTRNN
PBM
Weirauch et al.(2014)
pTH6326
0.621
0.537
ENSTNIG00000017092
M02109_2.00
Tetraodon nigroviridis
YYAATCAD
HTGATTRR
PBM
Weirauch et al.(2014)
pTH6064
0.615
0.500
mixl1.S
M02233_2.00
Xenopus laevis
NHTAATTAANN
NNTTAATTADN
PBM
Weirauch et al.(2014)
pTH6163
0.602
0.593
Q9C1N5_COPSC
M02216_2.00
Coprinopsis scobicola
NBCAATCVN
NBGATTGVN
PBM
Weirauch et al.(2014)
pTH5843
0.600
0.444
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EDO27518
Homeodomain
15
68
RRQRTFFLKEQTVILEGAFQYERFPGIQIREKLARELDIDESRIQVWFQNRRSR
Links
Other
Homeodomain
family TFs
Other
Nematostella vectensis
TFs
100 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy