CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NEMVEDRAFT_v1g69052
(
Nematostella vectensis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
NEMVEDRAFT_v1g69052
T221075_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q0N4H7_NEMVE
M02164_2.00
Nematostella vectensis
NNDAYNDNNN
NNNHNRTHNN
PBM
Weirauch et al.(2014)
pTH6472
0.746
0.614
NEMVEDRAFT_v1g114268
M02145_2.00
Nematostella vectensis
WTAATBGRT
AYCVATTAW
PBM
Weirauch et al.(2014)
pTH6514
0.740
0.614
Q0N4H2_NEMVE
M02163_2.00
Nematostella vectensis
TAATYRVT
ABYRATTA
PBM
Weirauch et al.(2014)
pTH6303
0.728
0.561
TLX2
M02087_2.00
Homo sapiens
NYRDNNNNNN
NNNNNNHYRN
PBM
Weirauch et al.(2014)
pTH6482
0.601
0.614
Tlx2
M00526_2.00
Mus musculus
WTTAAWTA
TAWTTAAW
PBM
Berger et al.(2008)
Tlx2_3498
0.601
0.614
TLX2
M05020_2.00
Homo sapiens
BTAATTRN
NYAATTAV
SELEX
Yin et al.(2017)
TLX2_eDBD_HT-SELEX
0.601
0.614
TLX2
M10672_2.00
Homo sapiens
BNGTAAKDNB
VNHMTTACNV
Transfac
Matys et al.(2006)
V$NCX_01
0.601
0.614
TLX2
M05021_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
TLX2_eDBD_Methyl-HT-SELEX
0.601
0.614
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EDO46971
Homeodomain
1
57
KKNRSSFSAEQVFRLEKTFELQQYLGTKERQQLALALNMTDNQVKTWFQNRRMKQKR
Links
Other
Homeodomain
family TFs
Other
Nematostella vectensis
TFs
83 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy