CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NEMVEDRAFT_v1g80394
(
Nematostella vectensis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
NEMVEDRAFT_v1g80394
T221079_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NEMVEDRAFT_v1g80394
M02151_2.00
Nematostella vectensis
NNYWATNHN
NDNATWRNN
PBM
Weirauch et al.(2014)
pTH5904
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CG15696
M02125_2.00
Drosophila melanogaster
NNYWATHNN
NNDATWRNN
PBM
Weirauch et al.(2014)
pTH6445
0.727
0.544
CG15696
M06540_2.00
Drosophila melanogaster
TTRATTR
YAATYAA
B1H
Mathelier et al.(2014)
MA0176.1
0.727
0.544
CG15696
M06356_2.00
Drosophila melanogaster
BTTRATTR
YAATYAAV
B1H
Zhu et al.(2011)
CG15696_Cell_FBgn0038833
0.727
0.544
CG15696
M06357_2.00
Drosophila melanogaster
NHTWATTR
YAATWADN
B1H
Zhu et al.(2011)
CG15696_SOLEXA_FBgn0038833
0.727
0.544
CAD25284
M02053_2.00
Encephalitozoon cuniculi
YTAATTAB
VTAATTAR
PBM
Weirauch et al.(2014)
pTH6265
0.619
0.386
For this family, TFs with SR scores >
0.599
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02151_2.00
Homeodomain
1
57
RNPRIPFSASQLAALEAKFLDTHYLSSVEVRDLSSSLSVTEHRVKIWFQNRRAREKK
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EDO49538
Homeodomain
7
63
RNPRIPFSASQLAALEAKFLDTHYLSSVEVRDLSSSLSVTEHRVKIWFQNRRAREKK
Links
Other
Homeodomain
family TFs
Other
Nematostella vectensis
TFs
44 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy