OB03G17420 (Oryza brachyantha)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 OB03G17420 T221237_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
estExt_gwp_gw1.C_70211
M02220_2.00
Physcomitrella patens
HMATNANDNN

NNHNTNATKD
PBM
Weirauch et al.(2014)
pTH8489
0.675 0.667
ATHB-6
M02040_2.00
Arabidopsis thaliana
HATNATTDN

NHAATNATD
PBM
Weirauch et al.(2014)
pTH7670
0.674 0.632
ATHB-6
M06909_2.00
Arabidopsis thaliana
NNNHATKATTR

YAATMATDNNN
Dap-seq
OMalley et al.(2016)
ATHB6_col_a
0.674 0.632
ATHB-6
M06910_2.00
Arabidopsis thaliana
NCAATAATTRN

NYAATTATTGN
Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a
0.674 0.632
ATHB-16
M02050_2.00
Arabidopsis thaliana
YAATMATT

AATKATTR
PBM
Weirauch et al.(2014)
pTH7270
0.674 0.596
HAT5
M06914_2.00
Arabidopsis thaliana
NHAATAATTDW

WHAATTATTDN
Dap-seq
OMalley et al.(2016)
HAT5_col_a
0.662 0.632
HAT5
M06915_2.00
Arabidopsis thaliana
WNYAATAATTRWDN

NHWYAATTATTRNW
Dap-seq
OMalley et al.(2016)
HAT5_colamp_a
0.662 0.632
HAT5
M02683_2.00
Arabidopsis thaliana
SCAATAATTNNV

BNNAATTATTGS
SELEX
Mathelier et al.(2014)
MA0008.2
0.662 0.632
HAT5
M10624_2.00
Arabidopsis thaliana
YSCAATAATTNNVN

NBNNAATTATTGSR
Transfac
Matys et al.(2006)
P$ATHB1_01
0.662 0.632
ATHB-21
M06907_2.00
Arabidopsis thaliana
NNWHCAATWATTDN

NHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB21_col_a
0.658 0.649
ATHB-21
M06908_2.00
Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN

NNAHCAATWATTDNNNHHWW
Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a
0.658 0.649
HB-5
M06924_2.00
Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH

DWWDNNNHMAATWATTGDTNN
Dap-seq
OMalley et al.(2016)
ATHB40_col_a
0.657 0.667
HB-5
M06925_2.00
Arabidopsis thaliana
HHAATWATTGDWNN

NNWHCAATWATTDD
Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a
0.657 0.667
ATHB-5
M06932_2.00
Arabidopsis thaliana
NYAATMATTND

HNAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_col_a
0.656 0.596
ATHB-5
M06933_2.00
Arabidopsis thaliana
NYAATMATTN

NAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a
0.656 0.596
ATHB-5
M02684_2.00
Arabidopsis thaliana
CAATVATTGVVSV

BSBBCAATBATTG
SELEX
Mathelier et al.(2014)
MA0110.2
0.656 0.596
ATHB-5
M10630_2.00
Arabidopsis thaliana
CAATVATTG

CAATBATTG
Transfac
Matys et al.(2006)
P$ATHB5_01
0.656 0.596
ATHB-53
M06934_2.00
Arabidopsis thaliana
HMAATAATTRD

HYAATTATTKD
Dap-seq
OMalley et al.(2016)
ATHB53_col_a
0.652 0.614
ATHB-53
M06935_2.00
Arabidopsis thaliana
NNWHCAATWATTDDN

NHHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a
0.652 0.614
ATHB-13
M06900_2.00
Arabidopsis thaliana
HYAATAATTDD

HHAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB13_col_a
0.644 0.561
ATHB-13
M06901_2.00
Arabidopsis thaliana
NYAATAATTRW

WYAATTATTRN
Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a
0.644 0.561
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB03G17420.1 Homeodomain 58 114

Links

Other Homeodomain family TFs
Other Oryza brachyantha TFs

716 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R004209 Calypte anna Aan_R004209 I 0.000
Aan_R011063 Calypte anna Aan_R011063 I 0.000
Afo_R013359 Aptenodytes forsteri Afo_R013359 I 0.000
Brh_R001640 Buceros rhinoceros Brh_R001640 I 0.000
Brh_R004433 Buceros rhinoceros Brh_R004433 I 0.000
Cmyd_10017697 Chelonia mydas Cmyd_10017697 I 0.000
ENSAMEG00000008380 Ailuropoda melanoleuca ENSAMEG00000008380 I 0.000
ENSAMXG00000010595 Astyanax mexicanus ENSAMXG00000010595 I 0.000
ENSAPLG00000015442 Anas platyrhynchos ENSAPLG00000015442 I 0.000
ENSBTAP00000013193-D1 Bos grunniens ENSBTAP00000013193-D1 I 0.000
ENSCSAG00000003010 Chlorocebus sabaeus ENSCSAG00000003010 I 0.000
ENSFALG00000011727 Ficedula albicollis ENSFALG00000011727 I 0.000
ENSFALG00000013442 Ficedula albicollis ENSFALG00000013442 I 0.000
ENSGMOG00000019456 Gadus morhua ENSGMOG00000019456 N 0.000
ENSLACG00000004013 Latimeria chalumnae ENSLACG00000004013 I 0.000
ENSLOCG00000010331 Lepisosteus oculatus ENSLOCG00000010331 I 0.000
ENSMPUG00000011075 Mustela putorius furo ENSMPUG00000011075 I 0.000
ENSNLEG00000010848 Nomascus leucogenys ENSNLEG00000010848 I 0.000
ENSOARG00000007443 Ovis aries ENSOARG00000007443 I 0.000
ENSONIG00000017217 Oreochromis niloticus ENSONIG00000017217 I 0.000
ENSP00000377218 Macaca fascicularis ENSP00000377218 I 0.000
ENSPSIG00000016830 Pelodiscus sinensis ENSPSIG00000016830 I 0.000
ENSSHAG00000002124 Sarcophilus harrisii ENSSHAG00000002124 I 0.000
ENSXMAG00000011087 Xiphophorus maculatus ENSXMAG00000011087 I 0.000
Gfo_R010481 Geospiza fortis Gfo_R010481 I 0.000
Gfo_R013143 Geospiza fortis Gfo_R013143 I 0.000
IRF1 Anolis carolinensis ENSACAG00000012699 I 0.000
IRF1 Gallus gallus ENSGALG00000006785 I 0.000
IRF2 Sus scrofa ENSSSCG00000015782 I 0.000
IRF2 Taeniopygia guttata ENSTGUG00000006662 I 0.000
IRF2 Bos taurus ENSBTAG00000010002 I 0.000
IRF2 Tursiops truncatus ENSTTRG00000009391 I 0.000
IRF2 Canis familiaris ENSCAFG00000007761 I 0.000
IRF2 Homo sapiens ENSG00000168310 D 0.000
IRF2 Felis catus ENSFCAG00000030144 I 0.000
IRF2 Callithrix jacchus ENSCJAG00000005731 I 0.000
IRF2 Erinaceus europaeus ENSEEUG00000004690 I 0.000
IRF2 Equus caballus ENSECAG00000007508 I 0.000
IRF2 Choloepus hoffmanni ENSCHOG00000012067 I 0.000
IRF2 Vicugna pacos ENSVPAG00000011297 I 0.000
IRF2 Macaca mulatta ENSMMUG00000015087 I 0.000
Irf2 Rattus norvegicus ENSRNOG00000009824 I 0.000
IRF2 Pteropus vampyrus ENSPVAG00000007078 I 0.000
IRF2 Monodelphis domestica ENSMODG00000004393 I 0.000
IRF2 Myotis lucifugus ENSMLUG00000014246 I 0.000
Irf2 Mus musculus ENSMUSG00000031627 D 0.000
IRF2 Microcebus murinus ENSMICG00000015506 I 0.000
IRF2 Loxodonta africana ENSLAFG00000000088 I 0.000
IRF2 Oryctolagus cuniculus ENSOCUG00000009229 I 0.000
IRF2 Otolemur garnettii ENSOGAG00000010966 I 0.000
IRF2 Gorilla gorilla ENSGGOG00000016559 I 0.000
IRF2 Ochotona princeps ENSOPRG00000005398 I 0.000
IRF2 Gallus gallus ENSGALG00000010642 I 0.000
IRF2 Pan troglodytes ENSPTRG00000016639 I 0.000
IRF2 Cavia porcellus ENSCPOG00000013097 I 0.000
Myotis_brandtii_IRF2_10027054 Myotis brandtii Myotis_brandtii_IRF2_10027054 I 0.000
Pvit_14395 Pogona vitticeps Pvit_14395 I 0.000
Tal_R005926 Tyto alba Tal_R005926 I 0.000
txndc15 Danio rerio ENSDARG00000043249 I 0.000
txndc15 Gasterosteus aculeatus ENSGACG00000020876 I 0.000
txndc15 Takifugu rubripes ENSTRUG00000004321 I 0.000
txndc15 Oryzias latipes ENSORLG00000001131 I 0.000
txndc15 Tetraodon nigroviridis ENSTNIG00000019636 I 0.000