CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OB06G12380
(
Oryza brachyantha
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
OB06G12380
T221259_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HAT22
M06926_2.00
Arabidopsis thaliana
NNYAATCATT
AATGATTRNN
Dap-seq
OMalley et al.(2016)
HAT22_col_a
0.643
0.684
ATHB-4
M01065_2.00
Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN
PBM
Sullivan et al.(2014)
pTH8184
0.634
0.737
ATHB-4
M02042_2.00
Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN
PBM
Weirauch et al.(2014)
pTH8667
0.634
0.737
HAT3
M00728_2.00
Arabidopsis thaliana
DTGATTRV
BYAATCAH
PBM
Chang et al.(2013)
pTH7400
0.634
0.702
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OB06G12380.1
Homeodomain
98
154
ARKKLRLSKDQAAVLEECFKAHHTLTPKQKLALANSLSLRPRQGEGGVQNRRGRTKL
Links
Other
Homeodomain
family TFs
Other
Oryza brachyantha
TFs
481 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy