OBART03G05300 (Oryza barthii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 OBART03G05300 T221314_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-13
M06900_2.00
Arabidopsis thaliana
HYAATAATTDD

HHAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB13_col_a
0.861 0.946
ATHB-13
M06901_2.00
Arabidopsis thaliana
NYAATAATTRW

WYAATTATTRN
Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a
0.861 0.946
estExt_gwp_gw1.C_70211
M02220_2.00
Physcomitrella patens
HMATNANDNN

NNHNTNATKD
PBM
Weirauch et al.(2014)
pTH8489
0.829 0.839
ATHB-5
M06932_2.00
Arabidopsis thaliana
NYAATMATTND

HNAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_col_a
0.817 0.839
ATHB-5
M06933_2.00
Arabidopsis thaliana
NYAATMATTN

NAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a
0.817 0.839
ATHB-5
M02684_2.00
Arabidopsis thaliana
CAATVATTGVVSV

BSBBCAATBATTG
SELEX
Mathelier et al.(2014)
MA0110.2
0.817 0.839
ATHB-5
M10630_2.00
Arabidopsis thaliana
CAATVATTG

CAATBATTG
Transfac
Matys et al.(2006)
P$ATHB5_01
0.817 0.839
ATHB-16
M02050_2.00
Arabidopsis thaliana
YAATMATT

AATKATTR
PBM
Weirauch et al.(2014)
pTH7270
0.804 0.821
ATHB-6
M02040_2.00
Arabidopsis thaliana
HATNATTDN

NHAATNATD
PBM
Weirauch et al.(2014)
pTH7670
0.800 0.804
ATHB-6
M06909_2.00
Arabidopsis thaliana
NNNHATKATTR

YAATMATDNNN
Dap-seq
OMalley et al.(2016)
ATHB6_col_a
0.800 0.804
ATHB-6
M06910_2.00
Arabidopsis thaliana
NCAATAATTRN

NYAATTATTGN
Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a
0.800 0.804
HAT5
M06914_2.00
Arabidopsis thaliana
NHAATAATTDW

WHAATTATTDN
Dap-seq
OMalley et al.(2016)
HAT5_col_a
0.796 0.804
HAT5
M06915_2.00
Arabidopsis thaliana
WNYAATAATTRWDN

NHWYAATTATTRNW
Dap-seq
OMalley et al.(2016)
HAT5_colamp_a
0.796 0.804
HAT5
M02683_2.00
Arabidopsis thaliana
SCAATAATTNNV

BNNAATTATTGS
SELEX
Mathelier et al.(2014)
MA0008.2
0.796 0.804
HAT5
M10624_2.00
Arabidopsis thaliana
YSCAATAATTNNVN

NBNNAATTATTGSR
Transfac
Matys et al.(2006)
P$ATHB1_01
0.796 0.804
ATHB-21
M06907_2.00
Arabidopsis thaliana
NNWHCAATWATTDN

NHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB21_col_a
0.738 0.661
ATHB-21
M06908_2.00
Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN

NNAHCAATWATTDNNNHHWW
Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a
0.738 0.661
HB-5
M06924_2.00
Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH

DWWDNNNHMAATWATTGDTNN
Dap-seq
OMalley et al.(2016)
ATHB40_col_a
0.736 0.625
HB-5
M06925_2.00
Arabidopsis thaliana
HHAATWATTGDWNN

NNWHCAATWATTDD
Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a
0.736 0.625
ATHB-53
M06934_2.00
Arabidopsis thaliana
HMAATAATTRD

HYAATTATTKD
Dap-seq
OMalley et al.(2016)
ATHB53_col_a
0.731 0.589
ATHB-53
M06935_2.00
Arabidopsis thaliana
NNWHCAATWATTDDN

NHHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a
0.731 0.589
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.719 0.893
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.719 0.893
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.703 0.821
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.703 0.821
ATHB-7
M02043_2.00
Arabidopsis thaliana
NHWTGATTGN

NCAATCAWDN
PBM
Weirauch et al.(2014)
pTH8090
0.600 0.625
ATHB-7
M06911_2.00
Arabidopsis thaliana
NHYCAATCATTSW

WSAATGATTGRDN
Dap-seq
OMalley et al.(2016)
ATHB7_col_a
0.600 0.625
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART03G05300.1 Homeodomain 129 184

Links

Other Homeodomain family TFs
Other Oryza barthii TFs

819 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29661.m000901 Ricinus communis 29661.m000901 N 0.000
cassava10176.m1 Manihot esculenta cassava10176.m1 N 0.000
cassava8647.m1 Manihot esculenta cassava8647.m1 N 0.000
chr4.CM0128.430.nc Lotus japonicus chr4.CM0128.430.nc N 0.000
Ciclev10025567m.g Citrus clementina Ciclev10025567m.g N 0.000
Cla014227 Citrullus lanatus Cla014227 N 0.000
Cucsa.103040 Cucumis sativus Cucsa.103040 N 0.000
Eucgr.H02292 Eucalyptus grandis Eucgr.H02292 N 0.000
evm.TU.supercontig_6.41 Carica papaya evm.TU.supercontig_6.41 N 0.000
gene05720-v1.0-hybrid Fragaria vesca gene05720-v1.0-hybrid N 0.000
GLYMA05G22140 Glycine max GLYMA05G22140 N 0.000
GLYMA17G17710 Glycine max GLYMA17G17710 N 0.000
Gorai.007G056200 Gossypium raimondii Gorai.007G056200 N 0.000
Gorai.007G221900 Gossypium raimondii Gorai.007G221900 N 0.000
GSMUA_Achr10G11390_001 Musa acuminata GSMUA_Achr10G11390_001 N 0.000
GSMUA_Achr6G16880_001 Musa acuminata GSMUA_Achr6G16880_001 N 0.000
MDP0000247514 Malus domestica MDP0000247514 N 0.000
MTR_4g095500 Medicago truncatula MTR_4g095500 N 0.000
orange1.1g043764m.g Citrus sinensis orange1.1g043764m.g N 0.000
PGSC0003DMG400024937 Solanum tuberosum PGSC0003DMG400024937 N 0.000
PK13595.1 Cannabis sativa PK13595.1 N 0.000
Pm002406 Prunus mume Pm002406 N 0.000
POPTR_0005s18920 Populus trichocarpa POPTR_0005s18920 N 0.000
POPTR_0007s10030 Populus trichocarpa POPTR_0007s10030 N 0.000
PRUPE_ppa005079mg Prunus persica PRUPE_ppa005079mg N 0.000
SapurV1A.0116s0200 Salix purpurea SapurV1A.0116s0200 N 0.000
Solyc02g092570.1 Solanum lycopersicum Solyc02g092570.1 N 0.000
TCM_000764 Theobroma cacao TCM_000764 N 0.000
VIT_07s0129g00340 Vitis vinifera VIT_07s0129g00340 N 0.000