OMERI04G18610 (Oryza meridionalis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 OMERI04G18610 T221577_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HDG1
M06917_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_col100_a
0.838 0.807
HDG1
M06918_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_colamp_a
0.838 0.807
PK24181.1
M01252_2.00
Cannabis sativa
NNNNNNNHDH

DHDNNNNNNN
PBM
Lambert et al.(2019)
pTH11300
0.829 0.807
ANL2
M02046_2.00
Arabidopsis thaliana
NCATTWATKNN

NNMATWAATGN
PBM
Weirauch et al.(2014)
pTH8244
0.822 0.912
ANL2
M06919_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_col_a
0.822 0.912
ANL2
M06920_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_colamp_a
0.822 0.912
HDG11
M02039_2.00
Arabidopsis thaliana
DCATTWAWKD

HMWTWAATGH
PBM
Weirauch et al.(2014)
pTH7664
0.813 0.789
HDG11
M06904_2.00
Arabidopsis thaliana
DCATTWAWTRH

DYAWTWAATGH
Dap-seq
OMalley et al.(2016)
EDT1_col
0.813 0.789
ATML1
M02048_2.00
Arabidopsis thaliana
NNHNRHYRNN

NNYRDYNDNN
PBM
Weirauch et al.(2014)
pTH8203
0.807 0.789
PDF2
M06921_2.00
Arabidopsis thaliana
WNVGAATATTCYHTN

NADRGAATATTCBNW
Dap-seq
OMalley et al.(2016)
PDF2_col
0.807 0.789
ATML1
M10626_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ML1_01
0.807 0.789
PDF2
M10625_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PDF2_01
0.807 0.789
HDG9
M10628_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG9_01
0.789 0.649
HDG7
M06931_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG7_col_a
0.764 0.737
HDG7
M10629_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG7_01
0.764 0.737
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI04G18610.1 Homeodomain 121 178
OMERI04G18610.2 Homeodomain 121 178

Links

Other Homeodomain family TFs
Other Oryza meridionalis TFs

619 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_014_00175 Aquilegia coerulea Aquca_014_00175 N 0.000
cassava32027.m1 Manihot esculenta cassava32027.m1 N 0.000
cassava44367.m1 Manihot esculenta cassava44367.m1 N 0.000
Ca_23494 Cicer arietinum Ca_23494 N 0.000
Ca_26279 Cicer arietinum Ca_26279 N 0.000
Ciclev10000940m.g Citrus clementina Ciclev10000940m.g N 0.000
Eucgr.L03490 Eucalyptus grandis Eucgr.L03490 N 0.000
evm.TU.supercontig_36.32 Carica papaya evm.TU.supercontig_36.32 N 0.000
gene11137-v1.0-hybrid Fragaria vesca gene11137-v1.0-hybrid N 0.000
GLYMA04G43090 Glycine max GLYMA04G43090 N 0.000
GLYMA06G11610 Glycine max GLYMA06G11610 N 0.000
GLYMA13G02840 Glycine max GLYMA13G02840 N 0.000
Gorai.009G244200 Gossypium raimondii Gorai.009G244200 N 0.000
Gorai.010G048800 Gossypium raimondii Gorai.010G048800 N 0.000
LjT15C06.70.nc Lotus japonicus LjT15C06.70.nc N 0.000
LjT26J05.10.nc Lotus japonicus LjT26J05.10.nc N 0.000
Lus10008316.g Linum usitatissimum Lus10008316.g N 0.000
Lus10028056.g Linum usitatissimum Lus10028056.g N 0.000
MDP0000319342 Malus domestica MDP0000319342 N 0.000
MDP0000884524 Malus domestica MDP0000884524 N 0.000
MTR_3g072710 Medicago truncatula MTR_3g072710 N 0.000
MTR_5g058860 Medicago truncatula MTR_5g058860 N 0.000
orange1.1g011012m.g Citrus sinensis orange1.1g011012m.g N 0.000
PGSC0003DMG400012071 Solanum tuberosum PGSC0003DMG400012071 N 0.000
Pm004863 Prunus mume Pm004863 N 0.000
POPTR_0002s08660 Populus trichocarpa POPTR_0002s08660 N 0.000
POPTR_0005s15900 Populus trichocarpa POPTR_0005s15900 N 0.000
PRUPE_ppa018977mg Prunus persica PRUPE_ppa018977mg N 0.000
SapurV1A.0010s0900 Salix purpurea SapurV1A.0010s0900 N 0.000
SapurV1A.0105s0110 Salix purpurea SapurV1A.0105s0110 N 0.000
Solyc11g013150.1 Solanum lycopersicum Solyc11g013150.1 N 0.000
TCM_035069 Theobroma cacao TCM_035069 N 0.000
VIT_18s0001g03310 Vitis vinifera VIT_18s0001g03310 N 0.000