ORGLA04G0178100 (Oryza glaberrima)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ORGLA04G0178100 T221839_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HAT2
M06929_2.00
Arabidopsis thaliana
NHAATGATTRN

NYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT2_colamp_a
0.827 0.772
HAT2
M06930_2.00
Arabidopsis thaliana
WNYAATCATWD

HWATGATTRNW
Dap-seq
OMalley et al.(2016)
HAT2_col_v31
0.827 0.772
HAT22
M06926_2.00
Arabidopsis thaliana
NNYAATCATT

AATGATTRNN
Dap-seq
OMalley et al.(2016)
HAT22_col_a
0.823 0.772
HAT1
M02047_2.00
Arabidopsis thaliana
NMATGATTRN

NYAATCATKN
PBM
Weirauch et al.(2014)
pTH8107
0.797 0.807
HAT1
M06922_2.00
Arabidopsis thaliana
NHAATGATTRNNWDW

WHWNNYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT1_col_a
0.797 0.807
HAT1
M06923_2.00
Arabidopsis thaliana
NYAATCATTDN

NHAATGATTRN
Dap-seq
OMalley et al.(2016)
HAT1_colamp_a
0.797 0.807
ATHB-4
M01065_2.00
Arabidopsis thaliana
NBMTGCATRNN

NNYATGCAKVN
PBM
Sullivan et al.(2014)
pTH8184
0.792 0.789
ATHB-4
M02042_2.00
Arabidopsis thaliana
NNWTNATTRN

NYAATNAWNN
PBM
Weirauch et al.(2014)
pTH8667
0.792 0.789
HAT3
M00728_2.00
Arabidopsis thaliana
DTGATTRV

BYAATCAH
PBM
Chang et al.(2013)
pTH7400
0.792 0.772
ATHB-X
M06902_2.00
Arabidopsis thaliana
HHAATRATTRN

NYAATYATTDD
Dap-seq
OMalley et al.(2016)
ATHB18_col_a
0.773 0.649
ATHB-X
M06903_2.00
Arabidopsis thaliana
NYAATGATTRV

BYAATCATTRN
Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a
0.773 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA04G0178100.1 Homeodomain 80 136

Links

Other Homeodomain family TFs
Other Oryza glaberrima TFs

694 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA009056 Oryza indica BGIOSGA009056 N 0.000
TRIUR3_31159 Triticum urartu TRIUR3_31159 N 0.000
Traes_6DL_4196D1C2B Triticum aestivum Traes_6DL_4196D1C2B N 0.000
Traes_6AL_AA1F91A44 Triticum aestivum Traes_6AL_AA1F91A44 N 0.000
Si017425m.g Setaria italica Si017425m.g N 0.000
Sb04g027830 Sorghum bicolor Sb04g027830 N 0.000
OS02G0749800 Oryza sativa OS02G0749800 N 0.000
ONIVA06G04390 Oryza nivara ONIVA06G04390 N 0.000
OMERI02G31250 Oryza meridionalis OMERI02G31250 N 0.000
OLONG_003188 Oryza longistaminata OLONG_003188 N 0.000
OB02G39550 Oryza brachyantha OB02G39550 N 0.000
MLOC_7591 Hordeum vulgare MLOC_7591 N 0.000
GRMZM2G017429 Zea mays GRMZM2G017429 N 0.000
F775_17076 Aegilops tauschii F775_17076 N 0.000
Pavir.Aa00485 Panicum virgatum Pavir.Aa00485 N 0.000