ORGLA07G0017300 (Oryza glaberrima)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ORGLA07G0017300 T221857_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
KNAT6
M02037_2.00
Arabidopsis thaliana
NNWGACNNNN

NNNNGTCWNN
PBM
Weirauch et al.(2014)
pTH7296
0.850 0.842
KNOX3_HORVU
M10790_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$KNOX3_01
0.846 0.895
GRMZM2G135447
M02139_2.00
Zea mays
DTGACRKS

SMYGTCAH
PBM
Weirauch et al.(2014)
pTH6328
0.803 0.930
GRMZM2G087741
M02138_2.00
Zea mays
NNTGACRKCN

NGMYGTCANN
PBM
Weirauch et al.(2014)
pTH5816
0.764 0.719
PK25034.1
M01254_2.00
Cannabis sativa
NNTGACRKBN

NVMYGTCANN
PBM
Lambert et al.(2019)
pTH11259
0.710 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA07G0017300.1 Homeodomain 261 320

Links

Other Homeodomain family TFs
Other Oryza glaberrima TFs

310 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA006680 Oryza indica BGIOSGA006680 N 0.000
OGLUM02G12840 Oryza glumaepatula OGLUM02G12840 N 0.000
OMERI02G13490 Oryza meridionalis OMERI02G13490 N 0.000
ONIVA02G13620 Oryza nivara ONIVA02G13620 N 0.000
OPUNC02G11250 Oryza punctata OPUNC02G11250 N 0.000
ORGLA02G0113200 Oryza glaberrima ORGLA02G0113200 N 0.000
ORUFI02G12760 Oryza rufipogon ORUFI02G12760 N 0.000
OS02G0287000 Oryza sativa OS02G0287000 N 0.000