PGSC0003DMG400002835 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG400002835 T222146_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-6
M02040_2.00
Arabidopsis thaliana
HATNATTDN

NHAATNATD
PBM
Weirauch et al.(2014)
pTH7670
0.817 0.789
ATHB-6
M06909_2.00
Arabidopsis thaliana
NNNHATKATTR

YAATMATDNNN
Dap-seq
OMalley et al.(2016)
ATHB6_col_a
0.817 0.789
ATHB-6
M06910_2.00
Arabidopsis thaliana
NCAATAATTRN

NYAATTATTGN
Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a
0.817 0.789
ATHB-16
M02050_2.00
Arabidopsis thaliana
YAATMATT

AATKATTR
PBM
Weirauch et al.(2014)
pTH7270
0.817 0.772
ATHB-5
M06932_2.00
Arabidopsis thaliana
NYAATMATTND

HNAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_col_a
0.803 0.772
ATHB-5
M06933_2.00
Arabidopsis thaliana
NYAATMATTN

NAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a
0.803 0.772
ATHB-5
M02684_2.00
Arabidopsis thaliana
CAATVATTGVVSV

BSBBCAATBATTG
SELEX
Mathelier et al.(2014)
MA0110.2
0.803 0.772
ATHB-5
M10630_2.00
Arabidopsis thaliana
CAATVATTG

CAATBATTG
Transfac
Matys et al.(2006)
P$ATHB5_01
0.803 0.772
ATHB-13
M06900_2.00
Arabidopsis thaliana
HYAATAATTDD

HHAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB13_col_a
0.791 0.737
ATHB-13
M06901_2.00
Arabidopsis thaliana
NYAATAATTRW

WYAATTATTRN
Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a
0.791 0.737
estExt_gwp_gw1.C_70211
M02220_2.00
Physcomitrella patens
HMATNANDNN

NNHNTNATKD
PBM
Weirauch et al.(2014)
pTH8489
0.790 0.789
HAT5
M06914_2.00
Arabidopsis thaliana
NHAATAATTDW

WHAATTATTDN
Dap-seq
OMalley et al.(2016)
HAT5_col_a
0.774 0.789
HAT5
M06915_2.00
Arabidopsis thaliana
WNYAATAATTRWDN

NHWYAATTATTRNW
Dap-seq
OMalley et al.(2016)
HAT5_colamp_a
0.774 0.789
HAT5
M02683_2.00
Arabidopsis thaliana
SCAATAATTNNV

BNNAATTATTGS
SELEX
Mathelier et al.(2014)
MA0008.2
0.774 0.789
HAT5
M10624_2.00
Arabidopsis thaliana
YSCAATAATTNNVN

NBNNAATTATTGSR
Transfac
Matys et al.(2006)
P$ATHB1_01
0.774 0.789
ATHB-21
M06907_2.00
Arabidopsis thaliana
NNWHCAATWATTDN

NHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB21_col_a
0.695 0.614
ATHB-21
M06908_2.00
Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN

NNAHCAATWATTDNNNHHWW
Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a
0.695 0.614
HB-5
M06924_2.00
Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH

DWWDNNNHMAATWATTGDTNN
Dap-seq
OMalley et al.(2016)
ATHB40_col_a
0.694 0.614
HB-5
M06925_2.00
Arabidopsis thaliana
HHAATWATTGDWNN

NNWHCAATWATTDD
Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a
0.694 0.614
ATHB-53
M06934_2.00
Arabidopsis thaliana
HMAATAATTRD

HYAATTATTKD
Dap-seq
OMalley et al.(2016)
ATHB53_col_a
0.690 0.579
ATHB-53
M06935_2.00
Arabidopsis thaliana
NNWHCAATWATTDDN

NHHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a
0.690 0.579
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.653 0.772
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.653 0.772
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.633 0.737
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.633 0.737
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400007376 Homeodomain 78 134
PGSC0003DMT400007377 Homeodomain 38 94

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

794 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo9g014660 Brassica oleracea Bo9g014660 I 0.000
VIT_15s0021g01590 Vitis vinifera VIT_15s0021g01590 I 0.000
VIT_15s0021g01600 Vitis vinifera VIT_15s0021g01600 I 0.000
VIT_15s0021g01610 Vitis vinifera VIT_15s0021g01610 I 0.000
Cla003678 Citrullus lanatus Cla003678 I 0.000
Cla021384 Citrullus lanatus Cla021384 I 0.000
cassava4507.m1 Manihot esculenta cassava4507.m1 I 0.000
Cucsa.129330 Cucumis sativus Cucsa.129330 I 0.000
mgf021756m Mimulus guttatus mgf021756m I 0.000
mgf025885m Mimulus guttatus mgf025885m I 0.000
Bostr.25993s0288 Boechera stricta Bostr.25993s0288 I 0.000
gene21167-v1.0-hybrid Fragaria vesca gene21167-v1.0-hybrid I 0.000
Gorai.007G086100 Gossypium raimondii Gorai.007G086100 I 0.000
Gorai.008G108600 Gossypium raimondii Gorai.008G108600 I 0.000
Lus10013959.g Linum usitatissimum Lus10013959.g I 0.000
MDP0000180950 Malus domestica MDP0000180950 I 0.000
PK26398.1 Cannabis sativa PK26398.1 I 0.000
TCM_005704 Theobroma cacao TCM_005704 I 0.000
Solyc05g050790.1 Solanum lycopersicum Solyc05g050790.1 I 0.000
Bra028690 Brassica rapa Bra028690 I 0.000
Bra035919 Brassica rapa Bra035919 I 0.000
GLYMA10G33810 Glycine max GLYMA10G33810 I 0.000
GSMUA_Achr1G00490_001 Musa acuminata GSMUA_Achr1G00490_001 I 0.000
PGSC0003DMG400007027 Solanum tuberosum PGSC0003DMG400007027 I 0.000
PGSC0003DMG400026046 Solanum tuberosum PGSC0003DMG400026046 I 0.000
PGSC0003DMG400026049 Solanum tuberosum PGSC0003DMG400026049 I 0.000
PGSC0003DMG400036566 Solanum tuberosum PGSC0003DMG400036566 I 0.000
PGSC0003DMG400041045 Solanum tuberosum PGSC0003DMG400041045 I 0.000
Solyc01g090370.1 Solanum lycopersicum Solyc01g090370.1 I 0.000
Solyc01g090310.2 Solanum lycopersicum Solyc01g090310.2 I 0.000
Solyc01g090300.2 Solanum lycopersicum Solyc01g090300.2 I 0.000
chr5.CM0909.360.nc Lotus japonicus chr5.CM0909.360.nc I 0.000
PGSC0003DMG400025989 Solanum tuberosum PGSC0003DMG400025989 N 0.000
Ciclev10024298m.g Citrus clementina Ciclev10024298m.g N 0.000
Solyc01g090320.2 Solanum lycopersicum Solyc01g090320.2 N 0.000
Solyc01g090340.2 Solanum lycopersicum Solyc01g090340.2 N 0.000
orange1.1g045684m.g Citrus sinensis orange1.1g045684m.g N 0.000
PGSC0003DMG400046672 Solanum tuberosum PGSC0003DMG400046672 N 0.000