PGSC0003DMG400005472 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG400005472 T222154_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.709 0.667
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.709 0.667
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.689 0.630
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.689 0.630
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.642 0.537
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.622 0.704
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.622 0.704
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.612 0.519
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.612 0.519
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.612 0.519
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400013968 Homeodomain 21 74

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

151 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.859
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.731
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.718
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.718
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.713
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.709
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.709
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.709
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.709
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.709
Cla010510 Citrullus lanatus Cla010510 I 0.709
Ca_10527 Cicer arietinum Ca_10527 I 0.709
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.709
Pm015861 Prunus mume Pm015861 I 0.709
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.709
29822.m003500 Ricinus communis 29822.m003500 I 0.709
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.709
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.709
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.709
MDP0000737128 Malus domestica MDP0000737128 I 0.709
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.709
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.709
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.709
PK20392.1 Cannabis sativa PK20392.1 D 0.709
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.709
MDP0000124827 Malus domestica MDP0000124827 I 0.709
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.709
TCM_018470 Theobroma cacao TCM_018470 I 0.709
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.709
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.709
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.708
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.708
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.708
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.708
Bo3g010120 Brassica oleracea Bo3g010120 I 0.708
Bo2g012410 Brassica oleracea Bo2g012410 I 0.708
HAT7 Arabidopsis thaliana AT5G15150 I 0.708
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.708
Bo9g165360 Brassica oleracea Bo9g165360 I 0.708
Bra006285 Brassica rapa Bra006285 I 0.708
Bra023506 Brassica rapa Bra023506 I 0.708
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.708
Bra008717 Brassica rapa Bra008717 I 0.708
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.708
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.708
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.704
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.699
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.689
Bra039135 Brassica rapa Bra039135 I 0.689
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.689
Bo1g158730 Brassica oleracea Bo1g158730 I 0.689
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.689
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.689
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.689
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.689
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.686
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.683
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.676
Bo12274s010 Brassica oleracea Bo12274s010 I 0.672
mgf019824m Mimulus guttatus mgf019824m I 0.662
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.662
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.651
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.647
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.647
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.644
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.642
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.641
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.641
Bo4g100070 Brassica oleracea Bo4g100070 I 0.637
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.633
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.632
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.631
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.631
TCM_031644 Theobroma cacao TCM_031644 I 0.631
Pm011328 Prunus mume Pm011328 I 0.631
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.631
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.631
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.631
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.631
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.631
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.631
MDP0000146339 Malus domestica MDP0000146339 I 0.630
MDP0000909160 Malus domestica MDP0000909160 I 0.630
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.630
mgf022748m Mimulus guttatus mgf022748m I 0.623
Bra028820 Brassica rapa Bra028820 I 0.623
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.623
Bo2g005230 Brassica oleracea Bo2g005230 I 0.623
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.623
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.622
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.622
Bo8g097390 Brassica oleracea Bo8g097390 I 0.622
Bra007637 Brassica rapa Bra007637 I 0.622
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.622
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.622
Bra014417 Brassica rapa Bra014417 I 0.622
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.622
Cla018017 Citrullus lanatus Cla018017 I 0.621
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.621
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.619
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.618
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.616
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.615
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.613
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.613
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.613
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.613
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.613
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.613
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.613
Bo3g002560 Brassica oleracea Bo3g002560 I 0.612
Bo9g181720 Brassica oleracea Bo9g181720 I 0.612
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.612
Bra009510 Brassica rapa Bra009510 I 0.612
Cla018641 Citrullus lanatus Cla018641 I 0.612
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.612
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.612
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.612
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.612
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.612
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.612
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.612
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.612
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.611
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.610
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.610
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.610
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.610
Bra022687 Brassica rapa Bra022687 I 0.610
Bo2g042250 Brassica oleracea Bo2g042250 I 0.610
mgf013301m Mimulus guttatus mgf013301m I 0.609
Ca_17608 Cicer arietinum Ca_17608 I 0.609
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.609
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.607
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.605
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.605
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.605
Si030983m.g Setaria italica Si030983m.g I 0.605
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.605
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.605
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.604
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.603
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.603
MDP0000316497 Malus domestica MDP0000316497 I 0.603
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.603
Pm018314 Prunus mume Pm018314 I 0.603
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.602
OBART10G09370 Oryza barthii OBART10G09370 I 0.602
PK15535.1 Cannabis sativa PK15535.1 I 0.602
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.600
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.599