PGSC0003DMG400017787 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG400017787 T222186_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.633 0.579
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.628 0.614
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.628 0.614
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.627 0.456
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.611 0.579
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.611 0.579
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.611 0.579
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.608 0.579
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.608 0.579
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400045855 Homeodomain 54 110

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.867
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.865
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.860
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.857
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.814
Ciclev10016895m.g Citrus clementina Ciclev10016895m.g I 0.692
Eucgr.I02464 Eucalyptus grandis Eucgr.I02464 I 0.670
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.658
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.650
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.649
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.647
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.635
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.634
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.633
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.633
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.633
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.633
Bra005259 Brassica rapa Bra005259 I 0.633
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.633
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.633
Bo4g034490 Brassica oleracea Bo4g034490 I 0.633
Ca_10527 Cicer arietinum Ca_10527 I 0.628
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.628
Cla010510 Citrullus lanatus Cla010510 I 0.628
29822.m003500 Ricinus communis 29822.m003500 I 0.628
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.628
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.628
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.628
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.628
TCM_018470 Theobroma cacao TCM_018470 I 0.628
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.628
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.628
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.628
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.628
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.628
MDP0000737128 Malus domestica MDP0000737128 I 0.628
Bo2g012410 Brassica oleracea Bo2g012410 I 0.628
Bo3g010120 Brassica oleracea Bo3g010120 I 0.628
Bo9g165360 Brassica oleracea Bo9g165360 I 0.628
MDP0000124827 Malus domestica MDP0000124827 I 0.628
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.628
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.628
PK20392.1 Cannabis sativa PK20392.1 D 0.628
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.628
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.628
HAT7 Arabidopsis thaliana AT5G15150 I 0.628
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.628
Bra006285 Brassica rapa Bra006285 I 0.628
Bra008717 Brassica rapa Bra008717 I 0.628
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.628
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.628
Pm015861 Prunus mume Pm015861 I 0.628
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.628
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.628
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.628
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.628
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.628
Bra023506 Brassica rapa Bra023506 I 0.628
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.628
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.628
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.628
Q39944_HELAN Helianthus annuus Q39944_HELAN D 0.627
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.622
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.621
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.621
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.621
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.620
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.620
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.619
Bo3g002560 Brassica oleracea Bo3g002560 I 0.616
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.613
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.613
mgf022748m Mimulus guttatus mgf022748m I 0.613
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.613
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.613
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.613
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.613
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.611
MDP0000134241 Malus domestica MDP0000134241 I 0.611
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.611
MDP0000738604 Malus domestica MDP0000738604 I 0.611
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.611
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.611
Cla018641 Citrullus lanatus Cla018641 I 0.611
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.611
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.611
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.611
Bra009510 Brassica rapa Bra009510 I 0.611
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.611
Bo9g181720 Brassica oleracea Bo9g181720 I 0.611
MDP0000119544 Malus domestica MDP0000119544 I 0.611
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.611
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.611
TCM_022391 Theobroma cacao TCM_022391 I 0.611
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.611
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.611
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.611
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.611
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.611
Pm026270 Prunus mume Pm026270 I 0.611
29815.m000499 Ricinus communis 29815.m000499 I 0.611
Cla018017 Citrullus lanatus Cla018017 I 0.611
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.611
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.611
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.611
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.611
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.611
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.611
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.611
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.609
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.608
Bo1g158730 Brassica oleracea Bo1g158730 I 0.608
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.608
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.608
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.608
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.608
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.608
Bra039135 Brassica rapa Bra039135 I 0.608
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.608
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.607
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.605
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.605
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.603
mgf019824m Mimulus guttatus mgf019824m I 0.603
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.603
Bo12274s010 Brassica oleracea Bo12274s010 I 0.602
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.599
Bra028820 Brassica rapa Bra028820 I 0.599
Bo2g005230 Brassica oleracea Bo2g005230 I 0.599
PK15535.1 Cannabis sativa PK15535.1 I 0.599