PGSC0003DMG400018509 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG400018509 T222187_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.683 0.636
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.683 0.636
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.667 0.618
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.667 0.618
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.650 0.545
ATHB-12
M00865_2.00
Arabidopsis thaliana
NNNNNNNN

NNNNNNNN
PBM
Franco-Zorrilla et al.(2014)
ATHB12
0.630 0.691
ATHB-12
M02045_2.00
Arabidopsis thaliana
BHWWWWWWDV

BHWWWWWWDV
PBM
Weirauch et al.(2014)
pTH7207
0.630 0.691
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.619 0.545
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.619 0.545
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.619 0.545
Q39944_HELAN
M10802_2.00
Helianthus annuus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HAHB4_01
0.609 0.618
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400047621 Homeodomain 23 77
PGSC0003DMT400047622 Homeodomain 23 77

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.782
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.724
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.718
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.715
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.690
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.690
Bo4g100070 Brassica oleracea Bo4g100070 I 0.689
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.687
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.687
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.687
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.687
29822.m003500 Ricinus communis 29822.m003500 I 0.687
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.687
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.687
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.687
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.687
TCM_018470 Theobroma cacao TCM_018470 I 0.687
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.687
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.687
Cla010510 Citrullus lanatus Cla010510 I 0.687
Bra023506 Brassica rapa Bra023506 I 0.686
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.686
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.686
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.686
Bo2g012410 Brassica oleracea Bo2g012410 I 0.686
Bo9g165360 Brassica oleracea Bo9g165360 I 0.686
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.686
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.686
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.686
HAT7 Arabidopsis thaliana AT5G15150 I 0.686
Bra006285 Brassica rapa Bra006285 I 0.686
Bo3g010120 Brassica oleracea Bo3g010120 I 0.686
Bra008717 Brassica rapa Bra008717 I 0.686
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.685
Pm015861 Prunus mume Pm015861 I 0.683
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.683
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.683
MDP0000737128 Malus domestica MDP0000737128 I 0.683
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.683
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.683
PK20392.1 Cannabis sativa PK20392.1 D 0.683
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.683
MDP0000124827 Malus domestica MDP0000124827 I 0.683
Ca_10527 Cicer arietinum Ca_10527 I 0.683
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.683
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.683
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.683
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.683
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.681
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.681
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.679
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.676
Bra014417 Brassica rapa Bra014417 I 0.674
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.670
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.668
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.667
Bra039135 Brassica rapa Bra039135 I 0.667
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.667
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.667
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.667
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.667
Bo1g158730 Brassica oleracea Bo1g158730 I 0.667
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.665
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.663
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.663
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.663
Si030983m.g Setaria italica Si030983m.g I 0.663
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.663
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.663
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.662
mgf019824m Mimulus guttatus mgf019824m I 0.661
Ca_17608 Cicer arietinum Ca_17608 I 0.661
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.661
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.657
MDP0000316497 Malus domestica MDP0000316497 I 0.656
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.655
Pm018314 Prunus mume Pm018314 I 0.655
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.655
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.654
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.654
Bo12274s010 Brassica oleracea Bo12274s010 I 0.650
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.650
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.641
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.641
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.637
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.636
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.636
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.633
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.633
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.633
TCM_031644 Theobroma cacao TCM_031644 I 0.633
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.633
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.633
Pm011328 Prunus mume Pm011328 I 0.633
MDP0000146339 Malus domestica MDP0000146339 I 0.633
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.632
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.631
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.630
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.630
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.630
mgf022748m Mimulus guttatus mgf022748m I 0.630
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.630
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.630
Bra007637 Brassica rapa Bra007637 I 0.630
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.630
Bo8g097390 Brassica oleracea Bo8g097390 I 0.630
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.630
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.630
Cla018017 Citrullus lanatus Cla018017 I 0.629
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.629
MDP0000909160 Malus domestica MDP0000909160 I 0.625
mgf013301m Mimulus guttatus mgf013301m I 0.625
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.625
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.625
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.625
MDP0000311522 Malus domestica MDP0000311522 I 0.622
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.621
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.621
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.621
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.621
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.621
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.621
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.621
Bra009510 Brassica rapa Bra009510 I 0.619
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.619
Bo3g002560 Brassica oleracea Bo3g002560 I 0.619
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.619
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.619
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.619
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.619
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.619
Bo9g181720 Brassica oleracea Bo9g181720 I 0.619
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.619
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.615
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.615
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.614
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.614
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.613
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.610
Q39944_HELAN Helianthus annuus Q39944_HELAN D 0.609
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.608
Bo2g042250 Brassica oleracea Bo2g042250 I 0.608
Bra022687 Brassica rapa Bra022687 I 0.608
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.607
Bo2g005230 Brassica oleracea Bo2g005230 I 0.607
Bra028820 Brassica rapa Bra028820 I 0.607
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.604
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.604
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.604
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.600
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.599