PGSC0003DMG400022736 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG400022736 T222199_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK25034.1
M01254_2.00
Cannabis sativa
NNTGACRKBN

NVMYGTCANN
PBM
Lambert et al.(2019)
pTH11259
0.731 0.673
KNAT4
M01238_2.00
Arabidopsis thaliana
NNGACNNNN

NNNNGTCNN
PBM
Lambert et al.(2019)
pTH9968
0.714 0.827
KNAT3
M02051_2.00
Arabidopsis thaliana
NNNGACVBNN

NNVBGTCNNN
PBM
Weirauch et al.(2014)
pTH7600
0.714 0.827
KNAT7
M01064_2.00
Arabidopsis thaliana
TGACRKST

ASMYGTCA
PBM
Sullivan et al.(2014)
pTH9798
0.711 0.904
HOS66
M02156_2.00
Oryza sativa
NNNNDHNN

NNDHNNNN
PBM
Weirauch et al.(2014)
pTH8332
0.706 0.942
GRMZM2G087741
M02138_2.00
Zea mays
NNTGACRKCN

NGMYGTCANN
PBM
Weirauch et al.(2014)
pTH5816
0.636 0.692
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400058528 Homeodomain 242 296

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

315 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_03306 Aegilops tauschii F775_03306 N 0.000