PGSC0003DMG400031777 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG400031777 T222224_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.715 0.632
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.715 0.632
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.695 0.579
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.695 0.579
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.668 0.579
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.668 0.579
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.668 0.579
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.645 0.491
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400081296 Homeodomain 14 70

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

211 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.822
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.774
MDP0000909160 Malus domestica MDP0000909160 I 0.758
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.753
TCM_031644 Theobroma cacao TCM_031644 I 0.752
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.743
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.743
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.741
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.740
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.740
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.739
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.737
Pm011328 Prunus mume Pm011328 I 0.728
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.728
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.725
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.723
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.722
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.722
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.721
mgf025174m Mimulus guttatus mgf025174m I 0.721
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.721
MDP0000146339 Malus domestica MDP0000146339 I 0.721
mgf013301m Mimulus guttatus mgf013301m I 0.720
Bra023506 Brassica rapa Bra023506 I 0.717
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.717
Bra006285 Brassica rapa Bra006285 I 0.717
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.717
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.717
HAT7 Arabidopsis thaliana AT5G15150 I 0.717
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.717
Bo2g012410 Brassica oleracea Bo2g012410 I 0.717
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.717
Bo3g010120 Brassica oleracea Bo3g010120 I 0.717
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.717
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.717
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.716
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.716
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.716
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.715
MDP0000124827 Malus domestica MDP0000124827 I 0.715
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.715
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.715
29822.m003500 Ricinus communis 29822.m003500 I 0.715
Pm015861 Prunus mume Pm015861 I 0.715
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.715
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.715
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.715
Cla010510 Citrullus lanatus Cla010510 I 0.715
Ca_10527 Cicer arietinum Ca_10527 I 0.715
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.715
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.715
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.715
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.715
TCM_018470 Theobroma cacao TCM_018470 I 0.715
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.715
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.715
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.715
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.715
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.715
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.715
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.715
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.715
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.715
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.715
MDP0000737128 Malus domestica MDP0000737128 I 0.715
PK20392.1 Cannabis sativa PK20392.1 D 0.715
Bo9g165360 Brassica oleracea Bo9g165360 I 0.715
Bra008717 Brassica rapa Bra008717 I 0.715
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.712
Si030983m.g Setaria italica Si030983m.g I 0.710
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.710
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.710
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.710
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.710
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.710
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.710
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.709
Pm018314 Prunus mume Pm018314 I 0.709
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.708
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.702
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.702
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.700
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.695
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.695
Bo1g158730 Brassica oleracea Bo1g158730 I 0.695
Bra039135 Brassica rapa Bra039135 I 0.695
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.695
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.695
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.695
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.695
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.689
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.686
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.682
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.682
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.682
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.682
Bo12274s010 Brassica oleracea Bo12274s010 I 0.681
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.676
MDP0000311522 Malus domestica MDP0000311522 I 0.676
Bra022687 Brassica rapa Bra022687 I 0.675
Bo2g042250 Brassica oleracea Bo2g042250 I 0.675
29983.m003123 Ricinus communis 29983.m003123 I 0.675
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.675
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.675
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.675
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.670
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.670
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.670
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.670
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.670
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.670
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.668
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.668
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.668
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.668
Bra009510 Brassica rapa Bra009510 I 0.668
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.668
Bo3g002560 Brassica oleracea Bo3g002560 I 0.668
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.668
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.668
Bo9g181720 Brassica oleracea Bo9g181720 I 0.668
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.663
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.663
Cla018641 Citrullus lanatus Cla018641 I 0.662
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.662
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.659
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.659
mgf022748m Mimulus guttatus mgf022748m I 0.659
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.659
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.658
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.658
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.658
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.658
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.658
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.658
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.658
MDP0000738604 Malus domestica MDP0000738604 I 0.658
MDP0000134241 Malus domestica MDP0000134241 I 0.658
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.658
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.658
MDP0000119544 Malus domestica MDP0000119544 I 0.658
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.658
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.658
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.658
Pm026270 Prunus mume Pm026270 I 0.658
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.658
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.658
mgf019824m Mimulus guttatus mgf019824m I 0.658
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.658
Cla018017 Citrullus lanatus Cla018017 I 0.658
29815.m000499 Ricinus communis 29815.m000499 I 0.658
TCM_022391 Theobroma cacao TCM_022391 I 0.658
Bo2g005230 Brassica oleracea Bo2g005230 I 0.656
Bra028820 Brassica rapa Bra028820 I 0.656
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.646
PK15535.1 Cannabis sativa PK15535.1 I 0.646
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.645
Bra005259 Brassica rapa Bra005259 I 0.645
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.645
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.645
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.645
Bo4g034490 Brassica oleracea Bo4g034490 I 0.645
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.643
30089.m001006 Ricinus communis 30089.m001006 I 0.643
Ciclev10016895m.g Citrus clementina Ciclev10016895m.g I 0.643
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.639
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.637
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.635
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.633
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.630
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.626
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.625
MDP0000316497 Malus domestica MDP0000316497 I 0.624
Bra014417 Brassica rapa Bra014417 I 0.623
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.623
Bo4g100070 Brassica oleracea Bo4g100070 I 0.623
BRADI3G50220 Brachypodium distachyon BRADI3G50220 I 0.622
PDK_20s1318331g001 Phoenix dactylifera PDK_20s1318331g001 I 0.621
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.619
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.619
Ca_17608 Cicer arietinum Ca_17608 I 0.619
GRMZM2G117164 Zea mays GRMZM2G117164 I 0.618
HOX24 Oryza indica BGIOSGA008720 I 0.618
Pavir.Ab02438 Panicum virgatum Pavir.Ab02438 I 0.618
ORUFI02G27420 Oryza rufipogon ORUFI02G27420 I 0.618
ORGLA02G0222500 Oryza glaberrima ORGLA02G0222500 I 0.618
Si018237m.g Setaria italica Si018237m.g I 0.618
Sb04g033380 Sorghum bicolor Sb04g033380 I 0.618
OPUNC02G23740 Oryza punctata OPUNC02G23740 I 0.618
HOX24 Oryza sativa OS02G0649300 I 0.618
OGLUM02G26440 Oryza glumaepatula OGLUM02G26440 I 0.618
OMERI02G25450 Oryza meridionalis OMERI02G25450 I 0.618
ONIVA02G28400 Oryza nivara ONIVA02G28400 I 0.618
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.617
Pavir.J39801 Panicum virgatum Pavir.J39801 I 0.616
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.613
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.613
evm.TU.supercontig_83.103 Carica papaya evm.TU.supercontig_83.103 N 0.608
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.607
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.607
SapurV1A.0118s0340 Salix purpurea SapurV1A.0118s0340 N 0.607
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.607
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.607
F775_30064 Aegilops tauschii F775_30064 I 0.606
Aquca_036_00050 Aquilegia coerulea Aquca_036_00050 N 0.606
Bra018155 Brassica rapa Bra018155 I 0.605
Lus10013277.g Linum usitatissimum Lus10013277.g I 0.605
Lus10030800.g Linum usitatissimum Lus10030800.g I 0.605
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.601
Lus10037218.g Linum usitatissimum Lus10037218.g I 0.599
Lus10036709.g Linum usitatissimum Lus10036709.g I 0.599